Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13d04
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    30   0.88 
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
           protein C16C10.3 protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 465 LPARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSA 346
           +P R + +N+ +    SKRS+   FS PK  TP GR S A
Sbjct: 17  IPKRDNRMNQDKDEPTSKRSA-PMFSTPKSTTPIGRDSFA 55


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
 Frame = -1

Query: 417 SKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RK-QYNVQAVSELGHSDTT 241
           S++S + Q S     + AG SS+ +NTLL T+R +      RK   + +++    H    
Sbjct: 673 SEQSVIGQVSPGSTTSAAGTSSARKNTLLDTKRLQNVAITRRKVAMDAKSIMAAVHQLNL 732

Query: 240 QSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGAL 76
            +L      S   VD+L       ++R+ Y   +   S +        D    AL
Sbjct: 733 SAL------SAEKVDILSRILPTDEERKLYAGKKTTESENSMENLSEDDNFVAAL 781


>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 25/87 (28%), Positives = 39/87 (44%)
 Frame = -1

Query: 465 LPARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQ 286
           LP+R   ++  +  AAS  ++    S P+  TP   SSS+ + +  T       R  R +
Sbjct: 699 LPSRHHSVHATKSSAASLLTT-PFVSKPQGITPTPSSSSSTSFVQFTPNTYSAVRSIRPR 757

Query: 285 YNVQAVSELGHSDTTQSLGARSRRSTS 205
             + +   L   D  Q    RS+RSTS
Sbjct: 758 QAIVSPDILRRYDPHQRFIVRSKRSTS 784


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 25/87 (28%), Positives = 39/87 (44%)
 Frame = -1

Query: 465 LPARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQ 286
           LP+R   ++  +  AAS  ++    S P+  TP   SSS+ + +  T       R  R +
Sbjct: 699 LPSRHHSVHATKSSAASLLTT-PFVSKPQGITPTPSSSSSTSFVQFTPNTYSAVRSIRPR 757

Query: 285 YNVQAVSELGHSDTTQSLGARSRRSTS 205
             + +   L   D  Q    RS+RSTS
Sbjct: 758 QAIVSPDILRRYDPHQRFIVRSKRSTS 784


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 78  ERRKHGHHVLNNGSCPPMRPARGYRTPV 161
           ++  HGHH  N+G     RP R  R PV
Sbjct: 48  KKHGHGHHHHNHGRPSRPRPTRPPRAPV 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,850,669
Number of Sequences: 27780
Number of extensions: 238584
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)