Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13d02
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 31 0.18
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 30 0.24
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 29 0.72
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 28 0.95
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.2
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 27 2.9
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 5.1
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 6.7
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 6.7
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 30.7 bits (66), Expect = 0.18
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 334 PQQDPIKFTYKVHRPKNDTQFCRFITETINSLKNDEIMKPVEAEVQKMLYG 486
P +D ++F Y + K TQF + E +N+L N +++ V + K ++G
Sbjct: 408 PDEDIVRFPYAILEVKLQTQFGQDPPEWVNNLVNSHLVEAV-PKFSKFIHG 457
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 30.3 bits (65), Expect = 0.24
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +1
Query: 157 KSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVN 318
KSRV IR++ SK+++ + K HL + + +E LSR HLE+NVN
Sbjct: 69 KSRVGDRIRDYASASKQVQNEYHQKSNHLREKFAQVLE-----LSR-HLEDNVN 116
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 28.7 bits (61), Expect = 0.72
Identities = 14/65 (21%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 136 ENFEKETKSRVAWFIRNHEEISKRL-KFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENN 312
+++++ KS V W +++++SKR + + Y L ++R + ++ +L++ E +
Sbjct: 2206 QDWDESDKSVVCWIEEHNDDLSKRTQELKSTYYSERLSKLLRSDRKGMIDSLAQVLTELD 2265
Query: 313 VNRRK 327
N +K
Sbjct: 2266 ENEKK 2270
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 28.3 bits (60), Expect = 0.95
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 145 EKETKSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIEMLLRTLSRQHLENNVNRR 324
E ET S + + E + ++S N YHL+DVI I +L + Q +E ++ RR
Sbjct: 153 EPETNSLIRMDVGIDECLHIEFEYSKNK--YHLKDVIIGKIYFILVRIKVQRMEVSIIRR 210
Query: 325 K 327
+
Sbjct: 211 E 211
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 136 ENFEKETKSRVAWFIRNHEEISKRLKFSANYKGYHLE 246
EN K++++RVA + ++ ++ L N + HLE
Sbjct: 1003 ENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLE 1039
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 482 YNIFCTSASTGFIISSFFKLLIVSVINLQNCVSFFGL*TLYV 357
+++ C S F++ +L ++ VI N +S F TLY+
Sbjct: 135 FDVHCNSFFPSFVLLYVIQLFLLPVITRDNFISLFMGNTLYL 176
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 97 LDYSNPYIIKFLSENFEKETKSRVAWFIRNHEEISKRLKFSANYKGYHLEDVIRKPIE 270
LD SN IK ++ ++E K+ + +IS L + Y+G +I KP+E
Sbjct: 549 LDDSNTESIKKRFDSLKEEAKANLEEQGFTESQISYELFLNCRYQGTDSTLMISKPLE 606
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 361 YKVHRPKNDTQFCRFITETINSLK 432
YKV+ DT +C+++T + LK
Sbjct: 30 YKVYFVTTDTFYCKYLTASFTGLK 53
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 349 IKFTYKVHRPKNDTQFCRFITETI---NSLKNDEIMKPVEAEVQKMLYGDLPN 498
+ F K+ KN+ C ++ I + + ++KPV+ QK L DLP+
Sbjct: 529 LSFLMKLSTHKNERIACLSASQLITVCHIFSDTTLIKPVKELFQKYLVNDLPS 581
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 277 LRTLSRQHLENNVNRRKVA 333
L TLS H+ N +NRR A
Sbjct: 596 LSTLSNHHVNNEINRRSFA 614
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,171
Number of Sequences: 5004
Number of extensions: 51707
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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