Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13c23
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 3.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 3.1
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 27 3.1
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 4.1
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 26 4.1
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 5.4
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 25 7.2
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 9.5
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 25 9.5
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 9.5
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 9.5
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 9.5
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.5
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 9.5
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = -3
Query: 603 TSTMISCMMALSIAYKLISCTADSQGYT*YVCSRIR*LPARRSPINKKQLLAASKRSSLR 424
T + + ++ALS+AY + + S S++ P RRS N L + LR
Sbjct: 103 TDPVQAAVLALSVAYAKPTSVSLSPTDL-QAQSKLIEKPRRRSASNATGSLNKKNQDPLR 161
Query: 423 QFSVPKRATPAGRSSSARNT 364
+FS+ + A A + S N+
Sbjct: 162 RFSISESAGAAAPTPSPSNS 181
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 321 RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV--DLLRASATQSKQRQEYGNHEPDASV 151
RK +NV LG SDT QS+ S V + LRAS TQS E DASV
Sbjct: 285 RKLFNVFL---LGDSDTIQSVAQASLTQAVTVVYERLRASHTQSNSTSAL--PEEDASV 338
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 132 LNNGSCPPMRPARGYRTPVAVWIE*RLHEEGL 227
L+N P PA Y V WIE RLH++ +
Sbjct: 127 LDNNRKPVHLPAPQYIEYVLAWIENRLHDQNV 158
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 4.1
Identities = 22/121 (18%), Positives = 53/121 (43%)
Frame = -3
Query: 405 RATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTTQSLGARSRRSTSNV 226
++TP R++S+RNT + R + ++ ++EL D ++R+ + V
Sbjct: 162 QSTPLNRNTSSRNTEMPLVRKDKPDFSNGHHDLIKQITEL--QDMLDKARDQARKKSRTV 219
Query: 225 DLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKIL 46
D+L + + + + + S + + + A N+ + K+F K + +++
Sbjct: 220 DILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLN---IHKNFQKIQSELI 276
Query: 45 Q 43
Q
Sbjct: 277 Q 277
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 189 RQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKILQ 43
RQ+Y + A V+K SK + CG++++ +LV+ K +I++
Sbjct: 129 RQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIK 177
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = -3
Query: 447 ASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRAEYKQRD*RKQYNVQAVSELGHSDTT 268
A++ S++Q S + A+P + + + +A R ++ Q NV+++ + +
Sbjct: 2 ATRSVSMKQTS-QRAASPNKTQGAKKWSAVAARGSKIAQSATNDHRNVESIKVVPENRVR 60
Query: 267 QSLGARSRRSTSNVDLLRAS 208
+ A++ S+SNV L +S
Sbjct: 61 GGVAAKATDSSSNVTSLASS 80
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 96 RMTLLVKDFYKFKLKILQYLLELIFRSLSHRI 1
+M+ LVK+FY F+ +LQ L+ H+I
Sbjct: 520 QMSQLVKNFYAFEDPLLQIEKSLVLNKPIHQI 551
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 447 ASKRSSLRQFSVPKRATPAGR 385
+S S R+ +P+RATPA R
Sbjct: 541 SSNSSGTRRLGLPQRATPASR 561
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -3
Query: 282 HSDTTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGAL 103
HS+ + S G+R R S S+ D + + + + + P + S G+ + GA+
Sbjct: 94 HSNVSSSSGSRGRSSVSSRDSSPSYSGALRSAERSISSSPSTIEARRRKSARGNGLNGAI 153
Query: 102 NI 97
++
Sbjct: 154 DV 155
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 243 RSTSNVDLLRASATQSKQRQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKD 73
+ST NV+ L + KQ ++ E + + Y H D+ GA+ + +KD
Sbjct: 197 QSTYNVERLISLLLSKKQPCDFVVREVLVQIVHSFYKAHLDKEEGAMQVFSLFSIKD 253
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 78 SLTMSF*CSERRKHGHHVLNNGSC 149
SLT CS RK+GH V+ C
Sbjct: 17 SLTFPMQCSALRKNGHVVIKGRPC 40
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 489 PARRSPINKKQLLAASKRSSLRQFSVPKRATPA 391
PA P N K+ + + S ++ + PK+ATPA
Sbjct: 52 PAVTDPSNAKKEINMAIESPSKKATSPKKATPA 84
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 595 YDLLYDGFVHRLQTYFLHGGFSGLHVIRLLPHPMTSS 485
+D+LYD FV R + LH + + ++P P +S
Sbjct: 561 FDILYDYFVKRNRYGVLHSKSNSVKDAYIIPMPSGNS 597
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 78 SLTMSF*CSERRKHGHHVLNNGSC 149
SLT CS RK+GH V+ C
Sbjct: 17 SLTFPMQCSALRKNGHVVIKGRPC 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,885
Number of Sequences: 5004
Number of extensions: 53096
Number of successful extensions: 143
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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