Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13c22
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    30   0.27 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   1.9  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   4.4  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    26   5.8  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   5.8  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   5.8  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   7.6  

>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 75  ISTDSAHPFSRLT-VKGGNEEKVKYIIEHMYQFLKDRNFMDENKVLSKEHTRLIRKFILY 251
           I ++++ PF     +   N  K K     MY+ L+D  F D+   L+ E++  +   I Y
Sbjct: 158 IGSETSIPFENHNEITNMNTAKDKLSSNEMYEKLRDLGFSDDQSRLALENSGSLEDAIEY 217

Query: 252 IILNGNFK 275
           I+   N K
Sbjct: 218 ILEKDNAK 225


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 249 YIILNGNFKTLEKLVEKDDIDSVIWTIPTVPHYLMCELIWSF 374
           +II       LEK     D+D V  TI T+   L+    W+F
Sbjct: 455 FIIFTNLLMHLEKTSPNSDVDGVSMTILTICKILLNNFDWNF 496


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 552 IETCLICKLMYNMLMIFLPTFVNSLMDCSTLCFL 451
           + T  +  L+Y+   +F P     L++C+T C +
Sbjct: 56  VRTSGLAMLLYSRFQLFFPVNEIPLLECATACLV 89


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 447 FIENTKYYNPLDCSQKLAKISLACYTLICRLNMFQFPEQENNTLLSETLKHFQNCTKN 620
           FIENTK +   + S+ LA  S+  Y     + + +  E     L   TLK     T++
Sbjct: 229 FIENTKNFYAKESSEYLASHSITDYLKKAEIRLAEEEELVRLYLHESTLKPLLEATED 286


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 102 SRLTVKGGNEEKVKYIIEHMYQFLKDRNFMDENKVLSKEH-TRLIRKFILYIILNGNFKT 278
           +R  +   N  K KY++  M++ L D N    N V  +   T L+  + L I +  + + 
Sbjct: 157 ARFLLTQKNYHKFKYLLRQMHELLSDEN----NSVADQNRGTHLLELYSLEIQMYSDIED 212

Query: 279 LEKLVEKDDIDSVIWTIPTVPH 344
            ++L  K+   S +     +PH
Sbjct: 213 NKRL--KELYQSSLRVKTAIPH 232


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -3

Query: 675 NSSFWKGFQFVNYXEVQQSFWYNFGNALRFHLIKYY 568
           N + + G++   +  V++  WY+   +L FHL  ++
Sbjct: 238 NPALFAGYEETPWGCVERFLWYSTSYSLNFHLFYHH 273


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 207 LSKEHTRLIRKFILYIILNGNFKTLEKLVE 296
           L+ EH  L+ K +   +LN + K LEKL+E
Sbjct: 440 LTSEHKDLVDK-VYTNVLNNHCKNLEKLIE 468


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 342 HYLMCELIWSFQVEHF 389
           H LMC+L+WS  +E F
Sbjct: 253 HGLMCDLLWSDPLEDF 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,290
Number of Sequences: 5004
Number of extensions: 68909
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)