Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13c22
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796... 30 2.0
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192... 30 2.0
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 29 3.4
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 29 3.4
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 29 4.5
11_01_0788 + 6599962-6602700 28 6.0
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 28 6.0
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996... 28 7.9
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 7.9
>08_02_1247 +
25578291-25578305,25579084-25579197,25579497-25579628,
25579726-25579854,25580024-25580421,25580503-25580602,
25580734-25580793,25580881-25580967,25581058-25581186,
25581260-25581559
Length = 487
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = -3
Query: 633 EVQQSFWYNFGNALRFHLIKYYFL--VREIETCLICKLMYNM--LMIFLPTFVNSLMDCS 466
E Q FW N NAL H Y L R T +I K YN+ L + NS++ C
Sbjct: 280 EEQLCFWINIHNALVMHAFMAYGLQEKRMKNTDMILKAAYNVGGLSVNAQIIQNSIIGCQ 339
Query: 465 T 463
+
Sbjct: 340 S 340
>01_07_0061 +
40818077-40818241,40818494-40818716,40819015-40819263,
40819455-40819505,40819611-40819871,40819994-40820046,
40820234-40820348,40820475-40820696,40821280-40822253
Length = 770
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 141 KYIIEHMYQFLKDRNFMDENKVLSKEHTRLIRKFILYII 257
K I++++Y F++ +NF K+ H RL+R + Y I
Sbjct: 733 KIIVDYVYNFIR-KNFRQPEKITCVPHNRLLRVGMTYEI 770
>05_05_0174 -
22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 252 IILNGNFKTLEKLVEKDDIDSVIWTIPTVPHYLMCELIWSFQVEHF-VYEIISY---AYP 419
+I+ GN KT E+L+E ++ ++ PTV L I S ++ V++ ++ A P
Sbjct: 72 VIIKGNAKTKEELIEA-EVAELLRAAPTVQDLLRNASIASARLRQLDVFDSVNITLDAGP 130
Query: 420 PLAVEVTGAFIENTKYYNPL 479
P T +E + NP+
Sbjct: 131 PELPGTTNVVVEVVEAANPI 150
>03_05_0327 - 23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = +3
Query: 411 AYPPLAVEVTGAFIENTKYYNPLDCSQKLAKISLACYTLICRLNMFQFPEQENNTLLSET 590
A+ L V + +IE ++ L+ + LA +SLA ++ + ++ E+ T ++ +
Sbjct: 774 AFSSLKV-ICQVYIEQCLQFDSLNATPLLAYLSLATHSALQDIDQTDISTSESTT-INHS 831
Query: 591 LKHFQNCTKNFVEPPNSLQTGNPSKKMN 674
L H NC + + T + K N
Sbjct: 832 LDHLLNCFDKLLNESVTGSTNSLKLKQN 859
>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 406 EMISYTKCSTWKLQINSHIK*CGTVG 329
E++ YT+C TW + I H + +G
Sbjct: 1639 EVLDYTRCDTWSVSIRGHERISEVIG 1664
>11_01_0788 + 6599962-6602700
Length = 912
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 272 QNIRKVGRKRRY*LSNMDHTDCATLFNV*INLEL 373
+ + K+ + RR + N+ +TDCA LF N++L
Sbjct: 696 EQLSKLLKLRRVWIDNISYTDCAKLFATLSNMQL 729
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 132 EKVKYIIEHMYQFLKDRNFMDENKVLSKEHTRL 230
+ VK + H+Y+ ++DRN + +++ TRL
Sbjct: 11 DSVKTFVSHLYRHIRDRNVYETHQMYEGGFTRL 43
>12_01_1019 -
10398880-10399314,10399401-10399481,10399560-10399652,
10399784-10399999,10403837-10403935,10404244-10404867,
10404946-10405033,10405167-10405430,10406437-10406504
Length = 655
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/52 (23%), Positives = 30/52 (57%)
Frame = +3
Query: 171 LKDRNFMDENKVLSKEHTRLIRKFILYIILNGNFKTLEKLVEKDDIDSVIWT 326
+ R + D+N VL+ + ++ ++L+ L GN++ ++K+ + D +W+
Sbjct: 254 ISKRWYTDDNYVLASQVKQVF--YVLHTKLKGNWQVVQKVNHRHLFDPEVWS 303
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +3
Query: 429 VEVTGAFIENTKYYNPLDCSQKLAKISLACYTLICRLNMFQFPEQENNTLLSETLKHFQN 608
+E T F+ + K + +D + SL C + C L F +E ++ L L + N
Sbjct: 601 LEFTKGFMSSNKQFEKVDLPNLVYACSLVCNLIHCSLLSRVF--EEKSSFLQVMLDYVTN 658
Query: 609 CTKNFV 626
K+ V
Sbjct: 659 AIKHIV 664
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,614,694
Number of Sequences: 37544
Number of extensions: 353057
Number of successful extensions: 792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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