Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13c19
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 30 0.23
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 29 0.53
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 28 0.92
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 1.6
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 27 2.1
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 26 3.7
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.9
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 4.9
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 8.6
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 30.3 bits (65), Expect = 0.23
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 375 YVHGGRINTVDLAKELNVDFNHITTHIPEIVK 470
Y+HG + T D ++ DF+H ++PE +K
Sbjct: 79 YIHGLKFATGDFVIIMDADFSHHPKYLPEFIK 110
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 29.1 bits (62), Expect = 0.53
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +3
Query: 135 LLSKQYSTMAPATDWDEIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLID--VI 308
+LSK+ A + KR ++ + +RLS RN ++ +L EL ++
Sbjct: 1 MLSKRGLNPVQAESRKKKKREQIKVREERAKRHEERLSHRNMSQMERQLSELTQLESSQA 60
Query: 309 FTNDGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVDFNH 440
K+ L +LQ + + +HG R+ V+ K + H
Sbjct: 61 LNAHDKQLLQNLQRDMAIMKKKNIHGHRVGRVESDKTKEAERQH 104
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 28.3 bits (60), Expect = 0.92
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 252 RNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVD 431
R I+ V +I L+ V E L +Q + + ++ VDL ++L V
Sbjct: 283 REAIQGVLDMIYDALLSVTVQAPDYETLMVIQACRRLYKPAHIQFALPKVVDLNRKLIVG 342
Query: 432 FNHITTHIPEIVKGKDVQLI 491
+NH H P +++ D L+
Sbjct: 343 YNHF-KHDPRVIRLHDKILL 361
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -3
Query: 367 SFISFISWSEVRYSLPSFVKITSINLSSINFVTISIQFR 251
SF FI +S + +LP I+ ++L S++ +T+SI R
Sbjct: 140 SFNLFIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLR 178
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 351 IKEMKDELYVHGGRINTVDLAKEL 422
I++ DEL VH G N +DL K L
Sbjct: 8 IEDSADELSVHSGNDNEIDLEKGL 31
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 273 TKLIELKLIDVIFTNDGKEYL 335
+KL+ELKL+D I T+D +L
Sbjct: 783 SKLLELKLVDGIVTDDSDVFL 803
>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 429 PHLTLWLNQQCLFGLHAHTTHLSFP 355
PH T N L GL HT L+FP
Sbjct: 29 PHNTFLTNILFLLGLIKHTNQLTFP 53
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 4.9
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Frame = +3
Query: 180 DEIKRLAADFQKAQL---STTAQRLSERNCIEIVTKLIE---LKLIDVIFTNDGKEYLTS 341
DE + DF+ L S++A E+NCIE K +E L LID+ ++ G ++T+
Sbjct: 301 DETRYGMGDFEARHLALDSSSAALAVEKNCIEGSLKYLENQFLSLIDLHLSDAG--HITT 358
Query: 342 LQLIKEM 362
+ ++++
Sbjct: 359 VNSVEKV 365
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 8.6
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +3
Query: 327 EYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVDF------NHITTHIPEIVKGKDVQL 488
+YL +LQL+ +DE Y + +NT + A ++ +F H+ T + E+ + K ++
Sbjct: 546 QYLQALQLV---EDERYDYDRVLNTTESAIKILANFCEPTIHEHLETALQELERSK--RI 600
Query: 489 ISGYLITNY 515
I LI Y
Sbjct: 601 IKNALIIVY 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,300
Number of Sequences: 5004
Number of extensions: 47115
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -