Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13c19
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89...    85   5e-17
04_03_0448 - 16020773-16021066,16023040-16023291,16023470-160236...    31   0.94 
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           28   5.0  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   5.0  
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065...    27   8.7  

>05_01_0133 +
           895107-895280,895960-896271,896815-897081,897161-897265
          Length = 285

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
 Frame = +3

Query: 183 EIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLID--VIFTNDGKEYLTSLQLIK 356
           E+  L    + AQ + ++ RLSERN +E+V KL E  +ID  ++ T  GKEY+TS  L  
Sbjct: 4   ELLELQRQLEAAQSARSSVRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKH 63

Query: 357 EMKDELYVHGGRINTVDLAKELNVDFNHITTHIPEIV-KGKDVQLISGYLITNYYLEKIA 533
           E+K E+    GR + VDL+  L VD  H+     ++V     + LI+G +++  Y + + 
Sbjct: 64  EIKMEIKKR-GRASLVDLSDILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVT 122

Query: 534 REVNEKLQLQGYISVGEL 587
            E+NEKLQ +  I++ E+
Sbjct: 123 EEINEKLQERSQIALAEI 140


>04_03_0448 -
           16020773-16021066,16023040-16023291,16023470-16023605,
           16023713-16023937,16024467-16024851,16025142-16025421
          Length = 523

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +3

Query: 225 STTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYV 380
           +T   R+  R+ + +V +LI + +   ++ +DG +  T  + I+E+ ++LYV
Sbjct: 467 TTNQARIDHRDVLPVVQRLINITMAIPLYYSDGIDGFTFGEGIQEVLEKLYV 518


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +3

Query: 279 LIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYVHGGRI----NTVDLAKELNVDFNHIT 446
           L+++KL   +FT +    L ++  ++ +        G I      ++L ++L++ FNH+T
Sbjct: 537 LVDIKLDQNVFTGNIPITLGNISSLRGLNLSHNNLSGTIPVSLGDLELLQQLDLSFNHLT 596

Query: 447 THIP 458
            H+P
Sbjct: 597 GHVP 600


>08_01_0114 -
           900530-901191,901269-901338,901536-901640,901721-901831,
           901912-902016,902245-902391,903273-903354,903445-903786,
           903873-904177,904259-904435,904799-904852,905171-905254,
           905855-905968,906048-906321,907552-907926,908003-908267,
           908352-908538,908615-909052,909895-909966,910037-910630,
           911471-911623,911700-911828,912326-912657,912705-912840,
           913046-913491,913580-915087,915169-915431,915622-915738,
           915844-916014,916743-916845,916930-916988,918360-918461,
           918560-918649,918727-918877,919745-919830,919926-920102,
           920915-920978,921859-922008,923132-923211,923311-923376,
           924540-924747,925502-925575,925761-925848,926140-926312,
           926541-926609,926698-926741,927074-927167,927290-927366,
           927475-927552,927992-928085
          Length = 3314

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 153 STMAPATDWDEIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKE 329
           S+ A  +D D IK +    +   +S+    L++ N   +  + I +KL+D +FT  G E
Sbjct: 501 SSFADVSD-DIIKDIYEGTEFHPISSAENHLTKENHYSLFVRKIGMKLVDAMFTGLGVE 558


>03_03_0258 -
           15905847-15905990,15906088-15906244,15906374-15906504,
           15906991-15907126,15907193-15907464,15907874-15908169,
           15908279-15908646,15908922-15908987,15909064-15909129,
           15909226-15909297,15909391-15909459,15909549-15909620,
           15909708-15909776,15909874-15909945,15910046-15910178,
           15911223-15911361
          Length = 753

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = +3

Query: 270 VTKLIELKLIDVIFTN---DGKEYLTSLQLIKEMKDELYVHGGRINTV-DLA-KELNVDF 434
           +T L  L L D  F+    D    LTSL ++  ++D  +   G I+ + DL   +LNV  
Sbjct: 179 LTNLATLDLSDNTFSGTLPDSFSNLTSLTML-HLQDNRFT--GTIDVLSDLPLTDLNVQN 235

Query: 435 NHITTHIPEIVKGKDVQLISGYLITN 512
           N ++  IP+ +KG     ISG   +N
Sbjct: 236 NQLSGAIPDKLKGISNLQISGNSFSN 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,394,145
Number of Sequences: 37544
Number of extensions: 241841
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)