Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13c19
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41012| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_8397| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-07) 30 1.7
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59) 29 2.9
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59) 29 2.9
SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14) 28 6.7
SB_50661| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_21527| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 27 8.9
SB_6527| Best HMM Match : CMV_US (HMM E-Value=3.1) 27 8.9
>SB_41012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 420 LNVDFNHITTHIPEIVK-GKDVQLISGYLITNYYLEKIAREVNEKLQLQGYISVGELT 590
+NVD +H+ + EI++ K + LI G LI YL+++A E+NE LQ G + + EL+
Sbjct: 2 INVDLSHVDNKVSEILRHDKSLVLIQGDLIDKDYLDRMAEEINETLQEAGQVFIAELS 59
>SB_8397| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-07)
Length = 307
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 451 CVVMWLKSTFNSLAKSTVFIRPPCTYNSSFISFISWSEVRYSLPSFVKITSINLSSINFV 272
CV WL S ++ KST Y +SFI+F+ ++ +P F K +S V
Sbjct: 202 CVTNWLDSLAKNVPKSTFSYLSMLLYTNSFINFLVYA---LRMPEFRKEVYKIISKCRHV 258
Query: 271 T 269
T
Sbjct: 259 T 259
>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +3
Query: 195 LAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDEL 374
L A+F K QL+T IE V + E K + V+ + + ++ +KD
Sbjct: 448 LLANFLKTQLNTDEHGKFR---IERVGQYFEDKPLTVLSSFGDNAFAKFVEGSTVLKDSP 504
Query: 375 YV--HGGRINTVDLAKELNVDFNHITTHIPEIV 467
Y+ H + + LAK L + NH H+ E++
Sbjct: 505 YMVSHSMEHSLLSLAKALVGNVNHTFKHVSEVI 537
>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +3
Query: 195 LAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDEL 374
L A+F K QL+T IE V + E K + V+ + + ++ +KD
Sbjct: 448 LLANFLKTQLNTDEHGKFR---IERVGQYFEDKPLTVLSSFGDNAFAKFVEGSTVLKDSP 504
Query: 375 YV--HGGRINTVDLAKELNVDFNHITTHIPEIV 467
Y+ H + + LAK L + NH H+ E++
Sbjct: 505 YMVSHSMEHSLLSLAKALVGNVNHTFKHVSEVI 537
>SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)
Length = 784
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 530 CQRSKRKVTASRLHICWGINLAL*F 604
C R K++V +R +IC+ IN A+ F
Sbjct: 48 CSRMKKRVMLTRPNICFSINCAIEF 72
>SB_50661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 455 SGNCKRQRCSVDIWLFDYK 511
SGNC+ RCSV +F Y+
Sbjct: 3 SGNCQYSRCSVKATIFGYR 21
>SB_21527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 527
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 381 HGGRINTVDLAKELNVDFNHITTHIPEIVKGKDVQLISGYLITNYYLEKIAREVNEKLQL 560
H GRI +D EL V ++ V G ++SG T+ YL+K+ + V++ ++L
Sbjct: 154 HAGRIGYLDAIAEL-VTYSK--------VNGASEAVLSGLSTTDTYLKKMRKTVSKMMRL 204
Query: 561 Q 563
Q
Sbjct: 205 Q 205
>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 1311
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +2
Query: 476 RCSVDIWLFDYKLLFGKNCQRSKRKVTASRLHICWG 583
+ S D+WLF++ +++ + +R K + + H G
Sbjct: 1069 QASFDVWLFEFSIVYCSSSRRLPLKFSTKKTHALSG 1104
>SB_6527| Best HMM Match : CMV_US (HMM E-Value=3.1)
Length = 340
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 381 HGGRINTVDLAKELNVDFNHITTHIPEIVKGKDVQLISGYLITNYYLEKIAREVNEKLQL 560
H GRI +D EL V ++ V G ++SG T+ YL+K+ + V++ ++L
Sbjct: 154 HAGRIGYLDAIAEL-VTYSK--------VNGASEAVLSGLSTTDTYLKKMRKTVSKMMRL 204
Query: 561 Q 563
Q
Sbjct: 205 Q 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,449,993
Number of Sequences: 59808
Number of extensions: 308382
Number of successful extensions: 696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -