Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13c19
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.25 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.25 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.25 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.25 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = +3

Query: 450 HIPEIVKGKDVQLISGYLITNYYLEKIAREVNE 548
           H+P+ ++G+    +   L+T Y+LE+++ ++ +
Sbjct: 251 HMPKEIRGQLYYFLHKQLMTRYFLERMSNDLGK 283


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = +3

Query: 450 HIPEIVKGKDVQLISGYLITNYYLEKIAREVNE 548
           H+P+ ++G+    +   L+T Y+LE+++ ++ +
Sbjct: 251 HMPKEIRGQLYYFLHKQLMTRYFLERMSNDLGK 283


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 13   SKRKIVDTIPYFESIILVRSISIETVIKILVIIL 114
            SKR I  T+P++  + ++  + + TV  ++ +++
Sbjct: 1597 SKRGIASTVPFYADVKVMLPLIVATVALVVAVVI 1630


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +1

Query: 13   SKRKIVDTIPYFESIILVRSISIETVIKILVIIL 114
            SKR I  T+P++  + ++  + + TV  ++ +++
Sbjct: 1593 SKRGIASTVPFYADVKVMLPLIVATVALVVAVVI 1626


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 475 LPFTISGMCVVMWLKSTFNSL-AKSTVFI 392
           L  ++ G C V+W+ ST  SL   S +FI
Sbjct: 68  LIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 475 LPFTISGMCVVMWLKSTFNSL-AKSTVFI 392
           L  ++ G C V+W+ ST  SL   S +FI
Sbjct: 68  LIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 315 NDGKEYLTSLQLI 353
           NDG  YLT +QLI
Sbjct: 363 NDGSLYLTKVQLI 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,030
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)