Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13c09
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454... 49 2e-06
08_01_0234 + 1914155-1914326,1914474-1914634,1914757-1914904,191... 45 4e-05
08_01_0230 + 1837700-1837871,1838035-1838195,1838329-1838476,183... 45 4e-05
08_02_1024 - 23723560-23723693,23723835-23724041,23724183-237243... 44 1e-04
09_04_0470 + 17875119-17875239,17875327-17875496,17875637-178757... 43 2e-04
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342... 42 3e-04
03_05_0533 - 25332015-25332145,25332231-25332449,25332595-253327... 40 0.002
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 39 0.002
03_05_0535 + 25352283-25352562,25352661-25352788,25352928-253530... 34 0.090
09_02_0410 - 8672855-8672970,8673062-8673265,8673618-8673768,867... 33 0.12
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 33 0.16
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 31 0.48
01_01_1028 - 8145716-8145841,8145943-8145988,8146329-8146548,814... 31 0.84
05_01_0322 - 2538320-2538742,2539349-2539521,2539764-2539854,254... 30 1.1
03_06_0359 + 33373096-33373761 30 1.1
03_06_0361 + 33377781-33378458 29 1.9
09_06_0337 - 22396350-22396994 29 3.4
09_06_0338 - 22398826-22399470 28 5.9
>01_01_0611 +
4541505-4541646,4543503-4543621,4543728-4543866,
4543924-4544178,4545094-4545212
Length = 257
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Frame = +2
Query: 215 LNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPCTYIKVFEDYQINMSIFVLKPGFRM 394
+ ++KS++D + A D + +++ TY+ ++E ++ IF L P +
Sbjct: 40 VERIKSVLDSISAADVSLTRNMSYFRRVNSNGIPKITYLHLYECEAFSIGIFCLPPRGVI 99
Query: 395 PLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLD-----LKVRARFEAARLAR 547
PLH+HP M K++ G + ++S+ ++ + + L + A+ + ARLA+
Sbjct: 100 PLHNHPNMTVFSKLLFGELRVKSYDWADASQDSTGVSLFIFVLSIDAQLQGARLAK 155
>08_01_0234 +
1914155-1914326,1914474-1914634,1914757-1914904,
1915221-1915357
Length = 205
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +2
Query: 287 IETWRQPLKAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 466
+ W QP+ TY+ V+E ++ IF L +PLHDHP M L K++ G+++++S+
Sbjct: 92 VARWAQPI----TYLHVYECDAFSIGIFCLPTSAVIPLHDHPGMTVLSKLLYGSMHVKSY 147
>08_01_0230 +
1837700-1837871,1838035-1838195,1838329-1838476,
1838802-1839002,1839301-1839416,1839463-1839501
Length = 278
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +2
Query: 287 IETWRQPLKAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 466
+ W QP+ TY+ V+E ++ IF L +PLHDHP M L K++ G+++++S+
Sbjct: 92 VARWAQPI----TYLHVYECDAFSIGIFCLPTSAVIPLHDHPGMTVLSKLLYGSMHVKSY 147
>08_02_1024 -
23723560-23723693,23723835-23724041,23724183-23724327,
23724440-23724615,23724713-23724851
Length = 266
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 323 TYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 466
TY+ + + +M +F G +PLHDHP M L K++ G+V ++S+
Sbjct: 94 TYMHIHQCADFSMGVFCFPAGATLPLHDHPEMVVLSKLLYGSVRVKSY 141
>09_04_0470 +
17875119-17875239,17875327-17875496,17875637-17875784,
17876491-17876697,17877550-17877656
Length = 250
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 323 TYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 466
TY+ + E ++ +F G +PLHDHP+M L K++ G++ ++S+
Sbjct: 86 TYVHIHECDDFSIGVFCFPAGATLPLHDHPQMVVLSKLLYGSMRVKSY 133
>01_05_0511 -
22831889-22832523,22833743-22833835,22834018-22834215,
22834365-22834494,22834596-22834714,22835244-22835487,
22835607-22835807
Length = 539
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +2
Query: 224 LKSMMDHLKAEDFAFDNSLNDIETWRQPLKAP-CTYIKVFEDYQINMS--IFVLKPGFRM 394
L ++D LK EDF D S+ P P TY+ F D +N S +F L +
Sbjct: 144 LTKLLDTLKLEDFGLDASMPYFRA--DPQGHPKVTYVH-FGDDSLNFSFGVFCLPQSAVI 200
Query: 395 PLHDHPRMHGLLKVITGAVNIRSF 466
PLHDH M K++ G+++I+S+
Sbjct: 201 PLHDHLGMTVFSKILHGSMHIKSY 224
>03_05_0533 -
25332015-25332145,25332231-25332449,25332595-25332754,
25332973-25333025,25334998-25335433
Length = 332
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 359 MSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 466
+++F L G MPLHDHP M K++ G+V+++SF
Sbjct: 164 VAVFYLPAGTVMPLHDHPGMTVFSKLLAGSVHVQSF 199
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 39.1 bits (87), Expect = 0.002
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = +2
Query: 143 PIVSIYRHAMRTFDDNFKMDFTTNLNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPC 322
P+ ++R F + ++ L SM+D +K ED P
Sbjct: 58 PLQRLFRACRAVFRGTGTVPAPGEVDLLCSMLDKMKPEDVGLRADQEFFTARDDDEGIPL 117
Query: 323 TY-IKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 466
++E M IF L +PLHDHP M K++ G+++IRS+
Sbjct: 118 IKNTTLYECDNFTMIIFFLPRNAIIPLHDHPGMTVFSKLLIGSLHIRSY 166
>03_05_0535 +
25352283-25352562,25352661-25352788,25352928-25353081,
25353182-25353379,25353467-25353618
Length = 303
Score = 33.9 bits (74), Expect = 0.090
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 323 TYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 466
T ++ ++ IF L P +PLH+HP M K++ G+++I+S+
Sbjct: 125 TRTTIYTCTNFSIVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHIKSY 172
>09_02_0410 -
8672855-8672970,8673062-8673265,8673618-8673768,
8674060-8674119,8675019-8675024
Length = 178
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 356 NMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVR 517
++ IF + +PLH+HP M K++ G V+++S+ T Q+ L KVR
Sbjct: 22 SIGIFCIPASSIIPLHNHPGMTVFSKLLYGTVHVKSYDWVEDTTQLLKLS-KVR 74
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 308 LKAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 466
+ P ++ D IF L +PLH+HP M K++ G+++++S+
Sbjct: 43 ISPPVAAMQTLFDTSREFGIFCLPKSAVIPLHNHPGMTVFCKILFGSMHLKSY 95
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = -3
Query: 370 ENAHIYLIVFKHFNVRTWGFK-----RLPPCLDIVEAII 269
E AH+ FKHF + TW FK L P +D++E+I+
Sbjct: 993 EEAHLNTC-FKHFTLFTWEFKLIDKAELAPLIDLIESIV 1030
>01_01_1028 -
8145716-8145841,8145943-8145988,8146329-8146548,
8146832-8146955
Length = 171
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 320 CTYI--KVFEDYQINMSI---FVLKPGFRMPLHDHPRMHGLLKVITG 445
C Y+ + + +N+SI F+L PG R+P H HP + TG
Sbjct: 18 CMYVILAIIGGWAVNISIDRGFILGPGLRLPAHFHPMFFPIGNWATG 64
>05_01_0322 -
2538320-2538742,2539349-2539521,2539764-2539854,
2540005-2540121,2540327-2540392,2540933-2541025,
2541661-2541721,2542634-2542707,2542782-2542848,
2543342-2543400
Length = 407
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 117 QPWKLLTYRLLYQYTGTQCAPLMTISKWISR 209
Q W L + LL+ Y G C + + KW+SR
Sbjct: 93 QKWGFLIW-LLFSYCGLACIACVAVGKWLSR 122
>03_06_0359 + 33373096-33373761
Length = 221
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +2
Query: 374 LKPGFRMPLHDHPRMHGLLKVITG 445
L PG PLH HPR L+ VITG
Sbjct: 104 LAPGGVNPLHSHPRAAELVHVITG 127
>03_06_0361 + 33377781-33378458
Length = 225
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 374 LKPGFRMPLHDHPRMHGLLKVITGAV 451
L PG PLH HPR L+ V+ G V
Sbjct: 110 LAPGGVNPLHSHPRATELIHVVAGRV 135
>09_06_0337 - 22396350-22396994
Length = 214
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 311 KAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNI 457
KA ++ + V P P H HPR LL V+ GA+++
Sbjct: 74 KATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSV 122
>09_06_0338 - 22398826-22399470
Length = 214
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 311 KAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNI 457
KA ++ ++ + P P H HPR LL ++ GA+++
Sbjct: 74 KATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSV 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,255,623
Number of Sequences: 37544
Number of extensions: 273897
Number of successful extensions: 649
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -