Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13c08
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 42 1e-04
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 33 0.046
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 29 0.43
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 29 0.74
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 0.74
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 28 0.98
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 28 0.98
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 28 1.3
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 1.7
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.7
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 27 2.3
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 27 3.0
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 26 4.0
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 4.0
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 5.2
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.2
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.2
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 26 5.2
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 6.9
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 9.1
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 41.5 bits (93), Expect = 1e-04
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Frame = +2
Query: 191 YNRDDAVQTKYLPDRGDSSDKREKSRILDLAERKRIRER-YTIRLKAADQNVNTSVGSKT 367
YN D A K L +G K+E+ RI +L E++RI+++ + + +DQ+VN S+ S
Sbjct: 195 YNPDAAAWMKLLDTKGSEELKKEQKRISELEEKERIQKKAFEDKGLVSDQDVNHSIDSDD 254
Query: 368 ISTCED------TTKDKSQTPS---KIDTESISAKGLCENDESIKKGRSV-KVPITSTLI 517
S E ++K+K +T S KI L E ++ + R++ K P S +
Sbjct: 255 QSEHEQAETPIPSSKNKRKTRSQRNKIRQRREEELRLLEQKKNEELLRTIDKAPAISKKL 314
Query: 518 SDNDRTRIYKVVRFINRKPQKGSIQIDLTSRAKKTSKY 631
D K +F N+ + +I L + KK K+
Sbjct: 315 QQKD-----KAEKFSNKAVSSSTTEIKL--KKKKFGKH 345
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 32.7 bits (71), Expect = 0.046
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +2
Query: 275 DLAERKRIRERYTIRLKAADQNVNTSVGSKTISTCEDTTKDKSQTPSKIDTESISAKGLC 454
D+++ K ++ IR A +S S + + DTT+ ++ T S+ T SIS+
Sbjct: 319 DVSDEKETEAKHEIRAPAIIVRETSSHPSTAVPSENDTTESENDTLSESSTTSISSSP-S 377
Query: 455 ENDESIKKGRSVKVPITSTLISDN 526
EN ++ V P +L++DN
Sbjct: 378 ENSDTSDDLTKVDSP-NKSLVNDN 400
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.43
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +2
Query: 287 RKRIRERYTIRL-KAADQNVNTS---VGSKTISTCEDTTKDKSQTPSKIDT 427
R+R+++R+ I++ +A++++ ++S VGSK + E TP+KI T
Sbjct: 347 RERVKKRHVIKIHEASNKSASSSETFVGSKNVDLTESAFDSIPDTPTKIIT 397
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 28.7 bits (61), Expect = 0.74
Identities = 26/98 (26%), Positives = 47/98 (47%)
Frame = +2
Query: 113 IDMSTRNNTKTEKSNESGDTKKIIDKYNRDDAVQTKYLPDRGDSSDKREKSRILDLAERK 292
I+M+ ++TKT ++ +T++ I K + ++ Q R + +K+EK RIL L E+K
Sbjct: 15 IEMAEFHSTKTSH-DQFEETEEEIKKRSPEELKQAIEAL-REKAKEKKEKERILALEEKK 72
Query: 293 RIRERYTIRLKAADQNVNTSVGSKTISTCEDTTKDKSQ 406
Y I K+ D+ + + D K + Q
Sbjct: 73 ---TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQ 107
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 0.74
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = +2
Query: 143 TEKSNESGDTKKIIDKYNRDDAVQTKYLPDRGDSSDKREKSRILDLAERKRIRERYTIRL 322
T+ +NE + K D+++ ++ DS + +K + E ++ + T +
Sbjct: 444 TKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEAD-VKAKETDSI 502
Query: 323 KAADQNVNTSVGSKTISTCEDT-TKDKSQTPSKIDTESISAKGLCENDESIKK 478
+ D+ T +T E T +KD ++ P+K D + + K + + +K+
Sbjct: 503 EVDDKEEKTD-SKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKE 554
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 0.98
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 5/156 (3%)
Frame = +2
Query: 122 STRNNTKTEKSNESGDTKKIIDKYNR----DDAVQTKYL-PDRGDSSDKREKSRILDLAE 286
ST + +N S + K++R DDA T L P R +K K LA
Sbjct: 240 STGGSETGGAANSSSTSNPSSAKWSRFTVYDDASHTHQLRPAR--RQEKLGKMLKDFLAG 297
Query: 287 RKRIRERYTIRLKAADQNVNTSVGSKTISTCEDTTKDKSQTPSKIDTESISAKGLCENDE 466
+ RE I +AAD S+ I+ + P+K+ + G C+ E
Sbjct: 298 NSKKREEERIAKEAADAQHQLSLVQSWINGYGQEKLADKKDPAKVSASFVEKYGRCQ--E 355
Query: 467 SIKKGRSVKVPITSTLISDNDRTRIYKVVRFINRKP 574
I +G V I + N + V+ RKP
Sbjct: 356 VIGRGAFGVVRIAHKVDPQNSGSETLYAVKEFRRKP 391
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 28.3 bits (60), Expect = 0.98
Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Frame = +2
Query: 188 KYNRDDAVQTKYLPDRGDSSDKREKSRILDLAERKRIRERYTIRLKAADQNVNTSVG--- 358
K+N + GD E+ +++ E K + + K + V++ V
Sbjct: 574 KHNSQNFASPMQTDAEGDIVQNEEEKESVEVEEGKHKNDLPKVSPKPPTEGVDSEVNGES 633
Query: 359 ----SKTISTCEDTTKDKSQTPSKIDTESISAKGLCENDESIKKGRSVKVPITSTLISDN 526
+K + + +D T + S+ PS + + L +ND+ + + I S IS+
Sbjct: 634 LVQVNKVLKSEDDNTSEASKDPSSHVKSPENIEKLKQNDDHFEVTEEITSTINSK-ISEK 692
Query: 527 DRTRIYKVVRFINRKPQ 577
+ + + + P+
Sbjct: 693 QENNVAETILEVTSSPK 709
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 407 TPSKIDTESISAKGLCENDES-IKKGRSVKVPITSTLISDN 526
+PSK+ +E+ CEN E ++G++ P++ ++ S+N
Sbjct: 369 SPSKLSSETTKVHRGCENTEKPSEEGKNFTTPLSDSVESEN 409
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 27.5 bits (58), Expect = 1.7
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +2
Query: 230 DRGDSSDKREKSRILDL--AERKRIRERYTIRLKAADQNVNTSVGSKTISTC-EDTTKDK 400
D DS R++S+ +D A K+ ++ + N V + S+ ED
Sbjct: 1314 DSSDSGKSRKRSQSVDSEDAGSKKPVKKIAASASGRGRKTNKPVATTIFSSDDEDDLLPS 1373
Query: 401 SQTPSKIDTESISAKGLCENDESIKK 478
S PS I + SAK + S+KK
Sbjct: 1374 SLKPSTITSTKASAKNKGKKASSVKK 1399
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +2
Query: 98 YINHLIDMSTRNNTKTEKSNESGDTKKIIDKYNRDDAVQTKYLPDRGDSSDKREKSRILD 277
+IN + +S + + K+NE K+ + N A Q + + + + +R ++ +
Sbjct: 471 HINKVEIVSDSSESFAHKNNEKRFDKEASGRINDLRAEQQQIMLEARQKAIERRRNEEEE 530
Query: 278 LAERKRIRERYTIRLKAADQNVNTS--VGSKTISTCEDTTKDKSQTPSKIDTESISAKGL 451
LA + + +K + +N+S + ++ S E + K ++ + + + S +GL
Sbjct: 531 LARSRERARKKAEEIKISSSKMNSSPTITNERSSNVESSKKVEAIYTKEPQSITNSPEGL 590
Query: 452 CENDES 469
N E+
Sbjct: 591 HSNQET 596
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 311 TIRLKAADQNVNTSVGSKTISTCEDTTKDKSQTPSKIDTESISAKGLCENDESIKKGRSV 490
+++ + + N N+ K E T KSQ+PS + ++ L S+K S+
Sbjct: 95 SLKRENKEVNANSKPPVKQQEVIESTVISKSQSPS-VKQLKLTESTLLAPSSSLKPSVSL 153
Query: 491 KVPITSTLI 517
K I+S L+
Sbjct: 154 KKDISSNLL 162
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.6 bits (56), Expect = 3.0
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = -3
Query: 471 IDSSFSQSPFAEIDSVSILLGVWLLSFVVSSQVDIVLDPTLVLTFWSAAFNLMVYLSLMR 292
+DSS + + + S LGV+ + +S V + +D L F A + ++ +
Sbjct: 4 LDSSIFRFRLSSLHVSSRSLGVYFAGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIP 63
Query: 291 FLSARSKILDFSLLSDESPRSGKYFVCTASSL 196
FL + I+ + + D+S SG F T SL
Sbjct: 64 FLCSILGIVIVNSI-DKSRLSGDSFAYTDESL 94
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 134 NTKTEKSNESGDTK-KIIDKYNRDDAVQTKYLPDRGDSSDKREKSRILDLAERKRIR 301
N ++KSN++GD K K + K N A D + + ++ + D+ KR++
Sbjct: 183 NKASKKSNKNGDKKRKHVSKSNSKHAKHELRTNRMLDGENVKSETSVTDMERVKRVK 239
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 119 MSTRNNTKTEKSNESGDTKKIIDKYNRDDAVQTKYLPDRGDSSDKRE 259
+S ++T ++ ++ DT+K +Y RD+A++ K + + G S E
Sbjct: 6 LSVVSSTASDTASHVSDTRK--RQYQRDEALRKKIISELGKKSGNFE 50
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +2
Query: 116 DMSTRNNTKTEKSNESGDTKKIIDKYNRDDAVQTKYLPDRGDSSDKREKSRILDLAERKR 295
D ST + +N+S T I K + + A T Y S +R D +RK
Sbjct: 422 DYSTSQEPSSNANNQSSPTSSINGKASSESANGTSY----SKGSSRRNSKNETDEEKRKS 477
Query: 296 IRER 307
ER
Sbjct: 478 FLER 481
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/63 (20%), Positives = 35/63 (55%)
Frame = +2
Query: 248 DKREKSRILDLAERKRIRERYTIRLKAADQNVNTSVGSKTISTCEDTTKDKSQTPSKIDT 427
+++ K R+L +++ K R+ YT + D+ ++ ++ +++ + TT + TP++ T
Sbjct: 462 EQQNKKRLLLVSQEKE-RKGYTSA--SPDRPLSQTITESSVAKTKSTTPKSTDTPTEATT 518
Query: 428 ESI 436
+
Sbjct: 519 SPV 521
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 5.2
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = +2
Query: 218 KYLPDRGDSSDKREKSRILDLAERKRIRERYTIRLKAADQNVNTSVGSKTISTCEDTTKD 397
K L R DK KS+ L+ E+K ++ + KAAD+ + K ++ D K
Sbjct: 11 KSLEYRSKKFDK--KSQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKH 68
Query: 398 KSQTPSKIDTESISAKGLCENDESI 472
P +S KG ND +
Sbjct: 69 SVSNPPHKTLKSKRQKGK-NNDRKV 92
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -3
Query: 528 SLSDISVLVIGTLTDLPFFIDSSFSQSPFAEIDSVSILLG--VWLLSFVVSSQVDIVLDP 355
SLS+ ++ + + +LPFF + ++ + AE+DS +L W S + +++ +
Sbjct: 875 SLSE-NITCLCVVGELPFFSKTCYNATVVAELDSAVWILDREGWETMLKSSDKAEVIENE 933
Query: 354 TLVLT 340
L LT
Sbjct: 934 MLYLT 938
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 618 FFARDVKSIWILPFCGFRLMNL 553
+ +RD + +WILPF + L L
Sbjct: 520 YLSRDNRELWILPFAYYELAAL 541
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 336 WSAAFNLMVYLSLMRFLSARSKIL---DFSLLSDESPRSGKYFVC 211
W + + L +MRFLS +K L + + ++ P G Y+ C
Sbjct: 570 WQSILSFFPALRIMRFLSITNKSLSSDNSAFTENDIPTLGAYWQC 614
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 284 ERKRIRERYTIRLKAADQNVNTSVGSKTISTCEDTTKDKSQTPSKIDTESISAKG 448
ER++ +ER +R K S G T+++ E +++ TP++ D+ SAKG
Sbjct: 184 EREK-KEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDS---SAKG 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,001
Number of Sequences: 5004
Number of extensions: 43334
Number of successful extensions: 150
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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