Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13c06
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.0  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   3.9  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    25   6.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.0  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 50  LIHFLYFKFSFILYSMECSTS 112
           LI+   F FSFILY++  STS
Sbjct: 845 LINLFRFSFSFILYNLLISTS 865


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +2

Query: 35  PFLLNLIHFLYFKFS 79
           P++LNLIH LYF+++
Sbjct: 655 PYILNLIHKLYFEWA 669


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 338 NPYFSCLRTRIMDFLFLFGSCTILLFYVFIILHNNICNETYSVDF 204
           NPYFS       D L L+G C+   + + +  ++  C    SVDF
Sbjct: 236 NPYFSNYNLTNDDILNLYGICS---YEIALQDYSEFCKLFNSVDF 277


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 186  RKFRDVKIYRISLIAYIIMKYYED 257
            RKFR +K +    ++Y+   Y+ED
Sbjct: 1804 RKFRSIKDFLKHTVSYLYSYYFED 1827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,020
Number of Sequences: 5004
Number of extensions: 53007
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)