Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13c06
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    30   1.7  
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734...    28   7.0  
06_01_0664 + 4850445-4850879,4853155-4854186                           27   9.3  
06_01_0602 - 4342333-4342790,4342899-4345623                           27   9.3  
02_05_0470 + 29303558-29303681,29303797-29303847,29304811-29305019     27   9.3  
02_04_0572 + 23972319-23973683                                         27   9.3  

>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 546 PNVSQELHDLSWMNSASVYLLGNFNELYQG 457
           P+ +Q   +LSWM   +VYL+ + N++Y+G
Sbjct: 50  PDWAQGSRELSWMPQCTVYLISS-NDIYEG 78


>04_04_0371 +
           24771687-24772081,24772139-24772535,24773394-24773435,
           24773571-24774305,24775357-24775480,24775613-24776580,
           24776917-24776925
          Length = 889

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 309 SCSQAAEIRIAKNKMKEAMNAICSSSRNVIGKKLFKVNKDELA*FPK 449
           SC  + E ++  N +   M  IC S R V   ++  VN    A F K
Sbjct: 432 SCKGSGEQQMLLNNLSSTMQRICKSLRTVYEAEVDNVNAGTAAVFRK 478


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 213 CRFSRHEICENESIHNRVLSVFITARNEKSLVFWLVE 103
           CR++ H++C    + N V++  +    E   + W  E
Sbjct: 120 CRYAVHKVCPKGPLRNEVINGAVRGTPEDDFIAWHFE 156


>06_01_0602 - 4342333-4342790,4342899-4345623
          Length = 1060

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -3

Query: 594 NLMSFNTMFSNPNVCIPNVSQELHDLSWMNSASVYLLGNFNELYQGNISLEIMQV 430
           NL S NT+  + N+    V  EL DLS +   S   LG  N L +G I +E+ ++
Sbjct: 141 NLSSLNTLDLSRNLFTGEVPPELGDLSKLQQLS---LG--NNLLEGKIPVELTRM 190


>02_05_0470 + 29303558-29303681,29303797-29303847,29304811-29305019
          Length = 127

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 317 RTRIMDFLFLFGSCTILLFYVFIILHNNICN 225
           R  IMD LF FG    L+ YV  I H  +C+
Sbjct: 52  RNHIMD-LFSFGRDMALVEYVEFIFHKEVCS 81


>02_04_0572 + 23972319-23973683
          Length = 454

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 603 NSFNLMSFNTMFSNPNVCIPNVSQELHDLSWMNSASVYLLG 481
           N   L+SFN   +N    IP+   +L  L W+N  + YL G
Sbjct: 339 NLQRLVSFNLSNNNLQGDIPSKFGDLQQLVWLNLGNNYLHG 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,505,681
Number of Sequences: 37544
Number of extensions: 268121
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)