Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13c06
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    29   2.1  
AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine re...    29   3.6  
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    27   8.4  
AF016419-7|AAG24050.1|  317|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -3

Query: 615 KFGFNSFNLMSFNTMFSNPNVCIPNVSQELHDLSWMNSASVYLLGNFNELYQGNISLEIM 436
           +FGF  F++ +F  +F N N  +  +  +L   S   S    L+    E+ +  I + + 
Sbjct: 130 RFGFEKFSIQNFCRVFENKNSTVQRLDLQLFYQSTNRSIFDLLVA---EIQKREIKIWVK 186

Query: 435 QVHL 424
           +VHL
Sbjct: 187 EVHL 190


>AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine
           receptor, class h protein250 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -1

Query: 308 IMDFLFLFGSCTILLFYVFIILHNNICNETYSVDFHVTKFAKMKVFITVY 159
           IM F+F+   C +LL+ V    HN I N    + F         V I VY
Sbjct: 248 IMTFMFI--PCVLLLYIVIFKYHNQILNNFIIILFSCFGTGSTVVIILVY 295


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 380 GTYCIHCFFHFVFSNPYFSCLRTRIMDFLFLFGSCTILLFYVFII 246
           G+  +  FF  + SNP F      ++ FL   G+   + F  FI+
Sbjct: 76  GSVILLTFFSNILSNPSFEKFHIVLIIFLLFGGAVVTIQFLAFIV 120


>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 431 FIFVNFK*FLSNNIARAGTYCIHCFFHF 348
           ++F NFK  +  N A  G     CFFH+
Sbjct: 148 YVFCNFKLNIPKNCAALGCAMNTCFFHY 175


>AF016419-7|AAG24050.1|  317|Caenorhabditis elegans Hypothetical
           protein F07G11.1 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 458 PWYNSLKLPSK*TLAEFIHDRSCNSCETFGIQTFGFENMVLNDIRLNELNPNFN 619
           P YN+L +      AE  +    N  E   + T G  + V  +IRL EL PN +
Sbjct: 97  PEYNALDIRPAPNRAEVKYIALPNKKEQLTMVTLGIGHDVKAEIRLKELYPNID 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,085,756
Number of Sequences: 27780
Number of extensions: 293151
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)