Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13c06
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.5  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 248 ILHNNICNETYSVDFHV 198
           I H N+   +++VDFHV
Sbjct: 68  IQHYNVDEYSHTVDFHV 84


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 510 MNSASVYLLGNFNELYQGNIS 448
           MN ++VYLLG+  E  Q N S
Sbjct: 1   MNESAVYLLGSEEEGNQLNRS 21


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 290 LFGSCTILLFYVFIIL 243
           +F S TIL+ Y++I++
Sbjct: 88  VFSSPTILISYIYILM 103


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 306 DSCSQAAEIRIAK 344
           ++ SQ+AEIRIAK
Sbjct: 262 NTSSQSAEIRIAK 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,001
Number of Sequences: 438
Number of extensions: 3325
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)