Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13c04
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   0.99 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.2  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 513 IKNTKSHIYSYNSTRNTLYFNTIY 584
           I N  ++ Y+YN+    LY+N  Y
Sbjct: 90  IHNNNNYKYNYNNNCKKLYYNINY 113


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -3

Query: 337 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 203
           NV   +C+ + ++F  +  ++GI QN        +I ++   G F
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 540 SYNSTRNTLYFNTIYXNY 593
           S+  T N  YF+  Y NY
Sbjct: 209 SWRITHNFFYFDPRYGNY 226


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 519 NTKSHIYSYNSTRNTLYFNTIYXN 590
           N  ++ Y+YN+    LY+     N
Sbjct: 325 NNNNYKYNYNNYNKKLYYKNYIIN 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,468
Number of Sequences: 438
Number of extensions: 1915
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)