Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13c02
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 30 0.36
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 1.5
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha... 27 2.6
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 27 3.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 4.5
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 26 5.9
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 7.9
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 25 7.9
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 29.9 bits (64), Expect = 0.36
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Frame = +2
Query: 74 IHCTGHALTRTAWRFYMRG----TSRIPPMQFTKQELPDLAG*LEVFSLGSPSIQCTRKL 241
I+C A+T T RFYMRG S P T P L F P +Q
Sbjct: 325 IYCV--AITSTGCRFYMRGGRGPISHYAPSNSTLSSTPPSTLQL-TFVRFPPPMQVENYA 381
Query: 242 NKKLY-*RPSWVQNLLANTLQIHNIWPVATSPRKLTSFLLLVSEPRFFS 385
+ + Y P ++QN + Q V T+P K +S + + FF+
Sbjct: 382 SSRNYPANPFFLQNQSTSQQQPERSSAVKTTPMKCSSLSNIYTSDLFFA 430
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 430 NSLEQKLRARIGE-AGYNTTVYTGTFGVTQLRDQN 531
N L Q +G+ G N +Y GTFG L+D+N
Sbjct: 898 NQLHQSAVRILGKMGGRNRQIYLGTFGFDFLQDEN 932
>SPBC409.20c |psh3||ER chaperone SHR3 homologue
Psh3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 618 IHNFVKVQRNRYLRVIVSVPVKVNINKLAILVP*LGYAEGSRVNS 484
+ N+V+ RN +L V+ + V V +++ LGY G V S
Sbjct: 128 LQNYVQFPRNMHLSVLAASHVLVEFLLAGVILIQLGYVFGYHVQS 172
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +1
Query: 403 WQPFN-AGNWNSLEQKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIYLYRDTNNNP 579
W P A NW S + A Y ++ + N L Y D
Sbjct: 332 WDPLQIANNWTSRGGRAAAFFMGLTYLVSMIAQNISDNTVAAANDLLYFFPRYLDIRRAQ 391
Query: 580 QIPVPLYFYKVVYEPVLQKGTAFVA 654
I + + + +V +LQ GTAF+A
Sbjct: 392 VIVIIIGAWAIVPWKILQNGTAFLA 416
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 260 RPSWVQNLLANTLQ-IHNIWPVATSPRKLTSFLLLVSEPRFFSSMPPLSGNHLMRVTGTR 436
RP + L+ TL + I P+ R L + + L NH++R T
Sbjct: 771 RPHYTVRTLSRTLSYVTEIAPIYGLRRSLYEGFCMSFLTLLDHTSESLLYNHVVRFTLGE 830
Query: 437 LNRNSVHALVKQ 472
LNR+ +A++KQ
Sbjct: 831 LNRDQQNAILKQ 842
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 247 FVELACTLY*RRPQGKNLQLTS*VW*LLFGELHWGDS 137
F EL LY ++ QGK L+L+ + LFG+++ DS
Sbjct: 767 FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTNDS 803
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 5.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 70 FYPLYWSCFDQ 102
FYP+YW C+ Q
Sbjct: 365 FYPIYWVCYGQ 375
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 511 LRRRFPCKQ*YYILLHQCVHGVSVQASSS 425
+R +FP +ILL++C+ +VQ S
Sbjct: 1179 VRNKFPSDDPAFILLYECLRSSNVQIDES 1207
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 22 YGNNTVIRVGFVINNFFYPLYWSC 93
YG NT+ ++ +++ F + L+ SC
Sbjct: 60 YGLNTIGKIVYILQIFLFSLFGSC 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,825
Number of Sequences: 5004
Number of extensions: 71589
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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