Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b24
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    68   8e-13
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.1  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   4.1  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   9.4  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    24   9.4  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   9.4  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 67.7 bits (158), Expect = 8e-13
 Identities = 30/39 (76%), Positives = 36/39 (92%)
 Frame = +2

Query: 83  KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKF 199
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  F
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAF 44



 Score = 54.4 bits (125), Expect = 8e-09
 Identities = 28/69 (40%), Positives = 41/69 (59%)
 Frame = +3

Query: 183 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLV 362
           K+  +FA+K M T ++RVD  LNK +W +G+RNVP           +D++D A  L+T V
Sbjct: 39  KEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYV 96

Query: 363 TYVPVASIK 389
             V VA+ K
Sbjct: 97  QAVDVANPK 105


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 433 GVYSWLASTFSVCKPLID 380
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 92   INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDGNSGHSSRHSLKQ 253
            INE VT +Y  N+   + G+G  ++A   +K+I     + D  S   S+  + +
Sbjct: 860  INEAVTNKYEANILPYIAGLG-PRKADYVLKKIAATGGRIDNRSDLISKQIMSR 912


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
 Frame = +3

Query: 192 ESFAEKQMGT--PDIRVD---TRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFT 356
           E  A+ + GT  PD++ +   T +++ +W   VR              N   +S H    
Sbjct: 105 EDIADLETGTLKPDLQEEIDFTIISRDVWDLLVRWYGLKGPEFPRETVNLGSES-HPHLV 163

Query: 357 LVTYVPVASIKGLQTENVDASQE*TP 434
           +  Y P+ S+  L T  VDA++   P
Sbjct: 164 VEVYPPIFSLTLLSTNAVDANESHKP 189


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 114 NIQLIYTNDFMVLDLKSVPQEQSKKSESFAEKQMGTPDIR 233
           NI     N+  VLDL   P ++S  S S    +  TP+ R
Sbjct: 276 NILNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQTPNAR 315


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 378 QQARKSLV*ITYVRNLHHHYVFVKASH 298
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,879
Number of Sequences: 5004
Number of extensions: 33198
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)