Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b24
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1181 - 24985963-24986242,24987109-24987197                       74   5e-14
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     72   2e-13
06_02_0140 + 12255418-12255512,12257514-12257793                       72   2e-13

>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
 Frame = +3

Query: 183 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLV 362
           K+   FA+K MGT D+RVD +LNK +WS G+R+VP           ND+ED+  +L++LV
Sbjct: 41  KEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLV 100

Query: 363 TY--VPVASIKGLQTENVD 413
           T   VP   +KGL T+ VD
Sbjct: 101 TVAEVPPEGLKGLGTKVVD 119



 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
 Frame = +2

Query: 71  ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDGNS 223
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKF  K  G +
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTT 54


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
 Frame = +3

Query: 129 YTNDFMVLDLKSVPQEQSKKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXX 308
           Y  D +    K  P    K+   FA+K MGT DIR+D +LNK +W+ G+R+VP       
Sbjct: 41  YAPDIVSTFKKKAPNA-IKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRI 99

Query: 309 XXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 413
               ND+ED+  +L++LVT   +P   +KGL T+ V+
Sbjct: 100 SRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 31/59 (52%), Positives = 35/59 (59%), Gaps = 16/59 (27%)
 Frame = +2

Query: 95  NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFR*KTDGNS 223
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKF  K  G +
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTT 71


>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
 Frame = +3

Query: 183 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLV 362
           K+   FA+K MGT D+RVD +LNK +WS G+R+VP           ND+ED+  +L++LV
Sbjct: 43  KEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLV 102

Query: 363 TY--VPVASIKGLQTENVD 413
           T   VP   +KGL T+ V+
Sbjct: 103 TVAEVPQEGLKGLGTKLVE 121



 Score = 70.1 bits (164), Expect = 8e-13
 Identities = 33/49 (67%), Positives = 38/49 (77%)
 Frame = +2

Query: 71  ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 217
           +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKF  K  G
Sbjct: 6   QRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMG 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,786,496
Number of Sequences: 37544
Number of extensions: 194597
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)