Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b23
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59...    25   8.7  
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9...    25   8.7  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    25   8.7  

>05_01_0089 +
           589457-589506,589598-589741,589820-589903,590118-590261,
           590351-590401,590492-590641,591175-591488,592685-592815,
           593131-593451,594994-595057,595322-595443
          Length = 524

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 133 KYNVDCKQYYSTNKYLIFTKISSYN 59
           KYN+DC   YS+ + L F KI+ YN
Sbjct: 463 KYNIDCATTYSSER-LQF-KITIYN 485


>05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
            9802-9902,10016-10651,10820-10899,11014-11673,
            11787-12041,12154-12281,12515-12669,12735-12919,
            13020-13049,13164-13239,13371-13504,13703-13994,
            14400-14567,14647-14745,14843-15014,15103-15281
          Length = 1352

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 139  NNKYNVDCKQYYSTNKYLIFT 77
            N K+  DC+    T  Y++FT
Sbjct: 1132 NTKFEDDCRSIIGTQSYVLFT 1152


>01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-514521,
            514598-514736,514823-514923,514995-515666,515953-516038,
            516112-516777,516874-517128,517231-517358,518645-518799,
            518880-519133,519186-519260,519324-519399,519511-519644,
            519871-520153,520692-520850,520940-521038,521142-521310,
            521423-521653,522002-522114,524179-524310,524389-524469,
            525641-525763
          Length = 1570

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 139  NNKYNVDCKQYYSTNKYLIFT 77
            N K+  DC+    T  Y++FT
Sbjct: 1346 NTKFEDDCRSIIGTQSYVLFT 1366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,999
Number of Sequences: 37544
Number of extensions: 39524
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)