Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b23
         (170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic mul...    31   0.083
AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical...    31   0.083
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    25   5.4  
U50072-2|AAQ01530.1|  367|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic
           multivulva protein LIN-8 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.083
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 121 DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 11
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical
           protein B0454.1 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.083
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 121 DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 11
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 142 INNKYNVDCKQYYSTNKY--LIFTKISSYN 59
           I +KYN+D  +Y   NKY  +I T  ++ N
Sbjct: 420 ILSKYNIDINKYIDINKYNDIIITHENTVN 449


>U50072-2|AAQ01530.1|  367|Caenorhabditis elegans Hypothetical
           protein K06B9.4 protein.
          Length = 367

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 151 QSLINNKYNVDCK-QYYSTNKYLIFTKISS-YN 59
           +SLIN KYNV C  + Y+  ++  F ++S+ YN
Sbjct: 21  RSLINTKYNVICHIEDYTPPQFDSFLQLSACYN 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,447
Number of Sequences: 27780
Number of extensions: 46450
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)