Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b22
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   351   4e-97
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    37   0.018
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.6  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.6  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.3  
Z30317-6|CAA82972.3|  193|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  351 bits (862), Expect = 4e-97
 Identities = 163/243 (67%), Positives = 192/243 (79%)
 Frame = +3

Query: 36  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 215
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 216 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 395
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 396 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 575
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 576 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGK 755
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G 
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241

Query: 756 GIR 764
           GIR
Sbjct: 242 GIR 244


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
 Frame = +2

Query: 464 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARG-HHRVPRETSR 637
           HH  +   +  +  H P  H ++ ++G H          H     G  G HH  P     
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518

Query: 638 LLRHCAHQGLHGTHLRHEVEQRVH----NRQGHEGVHLAAARQGH 760
              H  H G HG H         H       GH G H + A  GH
Sbjct: 519 HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGH 563



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +2

Query: 608 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGH 760
           HH    E      H  H G HGTH  H          GH G  H A A  GH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 576



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
 Frame = +2

Query: 578 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 748
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H   A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH-HGA 701

Query: 749 RQGH 760
             GH
Sbjct: 702 HHGH 705



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
 Frame = +2

Query: 464 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGARGHH--RVPRET 631
           HH  +   +  +  H P  H ++  +G H V       + HG       GHH        
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614

Query: 632 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGH 760
                + AH G HG H  H      H   G  H G H      GH
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGH 657



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +2

Query: 647 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGH 760
           H AH   HG H RH  E    H+   H G H      GH
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGH 428



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +2

Query: 608 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 736
           HHR   E        AH G HGTH  H  E   H+   H G H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +2

Query: 605 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 736
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = +2

Query: 608 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH 760
           HH      +    H  H G HG H         H   GH   H + A  GH
Sbjct: 409 HHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHG--HHSPAHHGH 457



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
 Frame = +2

Query: 509 PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARG-HHRVPRETSRLLRHCAHQGLHGTHLR 685
           P  H ++ ++G H          H     G  G HH  P        H +H   HG H  
Sbjct: 536 PAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHES 592

Query: 686 HEVEQRVHNRQGHEGVHLAAARQGH 760
           H          GH G H      GH
Sbjct: 593 HGHGHHAPAHHGHHGEH--GVHHGH 615



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/76 (26%), Positives = 25/76 (32%)
 Frame = +2

Query: 509 PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRH 688
           P  H ++ ++G+H        Y       GA  HH  P           H G HG H  H
Sbjct: 600 PAHHGHHGEHGVHHG-HHGAGYGAHHGHHGAH-HHHAPHHEHHEHHGDHHHGSHGVHHGH 657

Query: 689 EVEQRVHNRQGHEGVH 736
                     GH G H
Sbjct: 658 HGTHHSLAHHGHHGGH 673


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 348 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 479
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 566 LVYDHGRP*LGARGHHRVPRETSRLLRH 649
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 566 LVYDHGRP*LGARGHHRVPRETSRLLRH 649
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 759 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 670
           C C+ A  C P CP   + + CS T  R C+P
Sbjct: 54  CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 505  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 341
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z30317-6|CAA82972.3|  193|Caenorhabditis elegans Hypothetical
           protein T16G12.3 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 578 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG 757
           HG P LG++ H+    ++       AH+ LH        E+ VH  QG++     A   G
Sbjct: 51  HGHPSLGSQSHNLTSAQSEG---RNAHKDLH--------ERHVHPSQGYQRHGSKAPAHG 99

Query: 758 HP 763
           HP
Sbjct: 100 HP 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,407,442
Number of Sequences: 27780
Number of extensions: 452154
Number of successful extensions: 1407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)