Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b21
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.5  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   4.7  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   6.2  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   6.2  
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    25   8.2  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    25   8.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   8.2  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 22/93 (23%), Positives = 43/93 (46%)
 Frame = +2

Query: 227 LTNPSVVEIKPKTTAGQNKYCLKYLYSELFATAIEDAIIAYRILAESNSEMRIQKTLSDM 406
           LT+ S VE  P + +  +++C KYL   +  +     +IA +      +   +++ LS  
Sbjct: 93  LTSTSAVEAVPASISAYDEFCSKYLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLS-- 150

Query: 407 PILLAKKYSVEQPAFADELDSIDANNLKCTSYK 505
             L A+K  ++ P   + L  I +  L  T+ +
Sbjct: 151 VALKAQKPDMDSPELLEFLKPIQSELLTITNIR 183


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = +2

Query: 581 ENWKVLTDRNNGLISIERN-------RLNLIEEEAKNRNNLRELMKQYRQQ 712
           EN   L  +NNG+IS+E++          L   E KN +N+R ++   R +
Sbjct: 212 ENLNELHFKNNGVISVEKSISHFPQLGTQLARVELKNLSNVRNVVNSIRHE 262


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 479 SRRYCRVRRQTLAALHCTSWLEELAYR*GSFVCAFHYC 366
           S R CR+  +T+A+L+C    +      G +VC ++ C
Sbjct: 419 STRICRIPPETMASLYCGPEAD------GKYVCLYNGC 450


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +2

Query: 491 CTSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISIERNRLNLIEEEAKN 670
           C++Y L++L+NDR L        +LG ++L N  +  D    L   E++R    ++  K 
Sbjct: 193 CSAY-LSRLDNDRRLADHFSGKMHLGYAMLRN--IARDLRAQLEDREKSRDK--KDGEKQ 247

Query: 671 RNNL 682
           R+NL
Sbjct: 248 RDNL 251


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 389 KTLSDMPILLAKKYSVEQPAFADELDSIDANNLKCTSYKLNKLNNDRLLFSDIL 550
           K L D+ +L    + VEQ     E+D ID   LKC    L   N   + ++ ++
Sbjct: 17  KELYDIYLLRTNVFVVEQKCAYPEVDEID---LKCGHLMLRNANGKLVAYARLI 67


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 650 IEEEAKNRNNLRELMKQYRQQ 712
           +E+  KN NN   L+KQ+R++
Sbjct: 299 LEDAKKNENNRENLVKQWRRE 319


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 509  NKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISIERNRLNLIEEEAKNRNNLRE 688
            N   N +    ++L + Y+   LLE +K    +    I+  ++ +  IEEE    N L  
Sbjct: 911  NAEENKKCSIQELLESFYIQFPLLELYKFSCQQLQDYIAEGKDFVTKIEEETLKENPL-- 968

Query: 689  LMKQYRQ 709
            L  +YR+
Sbjct: 969  LFYEYRK 975


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,070
Number of Sequences: 5004
Number of extensions: 49514
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)