Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b21
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336...    32   0.52 
02_02_0162 + 7315562-7315846,7316432-7316662,7317002-7317144,731...    29   3.7  
02_01_0405 - 2952434-2955583                                           29   4.9  
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    28   8.5  
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450...    28   8.5  

>11_01_0441 -
           3363069-3363137,3363273-3363430,3363549-3363613,
           3363709-3363777,3363881-3363973,3364081-3364184,
           3364327-3364410,3364486-3364693,3364809-3364880,
           3365005-3365080,3365788-3365900,3366006-3366153,
           3366996-3367073,3367968-3368097,3368296-3368486,
           3368644-3368704,3368847-3368956,3369090-3369312
          Length = 683

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = +2

Query: 182 PPAFGIEGYARIGNPLTNPSVVEIKPKTTAGQ-NKYCLKYL-----YSELFATAIEDAII 343
           P A G +G   +  P     VV +KP  TAG+ +K  L  L        + A  +EDA+I
Sbjct: 343 PVALGADGGGSVRMPAALCGVVGLKP--TAGRFSKDGLLPLNWTVGMPGILAATVEDALI 400

Query: 344 AYRILAESNSEMRIQKTLSDMPILLAKKYSVEQPAFADEL 463
           AY  +A+ +    +Q     +  LL   +   +  FA++L
Sbjct: 401 AYAAIADQSQPSHLQANARTLYFLL-HVWMFSETEFAEDL 439


>02_02_0162 +
           7315562-7315846,7316432-7316662,7317002-7317144,
           7317267-7317381,7317940-7318020
          Length = 284

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
 Frame = +2

Query: 320 TAIEDAIIAYRILA--ESNSEMRIQKTLSDMPILLAKKY-SVEQPAFADELDSIDANN-L 487
           T I DA I   +L    S +E+   K LS +   L + Y S  + A  +EL+   A   L
Sbjct: 105 TTIPDASIFKGLLVFDVSFNEISSLKGLSKVSSTLKELYVSKNEVAKMEELEHFHALQIL 164

Query: 488 KCTSYKLNK-LNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISIER-NRLNLIEEE 661
           +  S +L + +  + L  S   I    GLS L+N +VL   +N L +IE    L+ +E+ 
Sbjct: 165 ELGSNRLRECIALEELYLSHNGIQKMEGLSTLQNLRVLDVSSNKLTAIEDVETLSRLEDL 224

Query: 662 AKNRNNLREL 691
             N N +  L
Sbjct: 225 WLNDNQIPSL 234


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 467 SIDANNLKCTSYKLNKLNNDRLLFSDILIATYLGLSLLENWKVL-TDRNN 613
           SI +N   CTS K+  LNN+   FS  LI  Y+  S L N K L   RNN
Sbjct: 316 SIPSNLSNCTSLKIIDLNNNN--FSGELI--YVNFSNLPNLKTLDLMRNN 361


>07_03_1567 -
           27772815-27773302,27773471-27773561,27773641-27773988,
           27774929-27775110,27775191-27775368,27775453-27775605,
           27775993-27776232,27776369-27776449,27776485-27776730,
           27777151-27777240,27777536-27777778,27778365-27778529,
           27779017-27779080,27779162-27779286,27779383-27779476,
           27779647-27779714,27779798-27779989,27780618-27780752,
           27780847-27780934,27781014-27781107,27781484-27781547,
           27781657-27781708,27781911-27782014,27782099-27782158,
           27782687-27782770,27782892-27783125,27783442-27783864,
           27784675-27784736,27784867-27785521
          Length = 1700

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 365 SNSEMRIQKTLSDMPILLAKKYSVEQPAFADELDSIDANNL 487
           S  E+ +     +M + L K+YS  +  FAD +  +D ++L
Sbjct: 483 SREEVEVHDVGKEMELDLIKQYSQVERIFADRVSKVDGDDL 523


>03_01_0612 -
           4501595-4501619,4501752-4501906,4502051-4502092,
           4502238-4502279,4502365-4502464,4502825-4502889,
           4503140-4503217
          Length = 168

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 503 KLNKLNNDRLLFSDILIATYLGLSLLENWKVLTDRNNGLISIERNRLNLIEEEAKNRNNL 682
           +L++LN ++L   +  + + LG  L    K + D  +GL   ER R+ LIEE  + +  +
Sbjct: 54  ELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGL---ERKRMQLIEENLRLKEQV 110

Query: 683 RELMKQYRQQ 712
             + +    Q
Sbjct: 111 SRMSRMEEMQ 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,010
Number of Sequences: 37544
Number of extensions: 268341
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)