Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b16
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0294 + 22855503-22855946,22856346-22856399                       31   1.1  
11_02_0011 - 7337618-7338496,7338596-7338991                           29   4.5  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    29   4.5  
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841...    29   4.5  
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920...    28   5.9  
01_01_1152 + 9170628-9171899                                           28   5.9  
11_02_0012 - 7346282-7347136,7347234-7347593                           28   7.8  
02_04_0632 + 24614659-24615528,24615636-24616133                       28   7.8  

>03_05_0294 + 22855503-22855946,22856346-22856399
          Length = 165

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 423 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDT 539
           NV  SPLS    L+L+  G      ++L++ LG+P   T
Sbjct: 45  NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGT 83


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 408 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTI 542
           +   KN+V SP S    LAL+  G      +ELL  LG    D +
Sbjct: 27  VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDL 71


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 420 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 527
           +NV  SPLS    L+L+  G      ++L ++LG P
Sbjct: 35  RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGP 70


>02_05_0997 +
           33382756-33382861,33383070-33383161,33383936-33384175,
           33384820-33384900,33384974-33385113,33385462-33385622,
           33385700-33385800,33385895-33385969,33386218-33386488,
           33386657-33386697,33386922-33387004,33387100-33387189,
           33387721-33387825,33388023-33388161,33388467-33388670,
           33388837-33388908,33389189-33389273,33389374-33389480
          Length = 730

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 318 LLEIKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEYLLALITLGT-TDPA 494
           L+E+    LSM +K  SSA+  F+ KF + L           S+E     +  GT T PA
Sbjct: 237 LVEVVRSSLSMMAKQWSSAMNLFNEKF-SALPSLIAAHGMESSSEDEFMSLLFGTRTSPA 295

Query: 495 -HEELLTSLG 521
            H+ L++SLG
Sbjct: 296 LHQFLVSSLG 305


>01_01_1157 -
           9203448-9203560,9204725-9204768,9205345-9205433,
           9205565-9205609,9205805-9205912,9206003-9206088,
           9206492-9206579,9206725-9206910,9207181-9207256,
           9207332-9207381,9207715-9207777,9207882-9207962,
           9208028-9208130,9208246-9208348,9208489-9208549,
           9209059-9209154,9209185-9209225,9209848-9209922,
           9210412-9210562
          Length = 552

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 589 PFIDF--NFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNG 437
           PF+ F   +DD   +++R V+S  I      +SCAGSV+ + ++ +K   D G
Sbjct: 84  PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 420 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 527
           +N + SPLS    LAL+  G       ELL  LG P
Sbjct: 59  RNFIVSPLSFHAALALVADGARGETQRELLGFLGSP 94


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 411 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTI 542
           +  +NVV SP+S    LAL+  G      +EL+  LG    D +
Sbjct: 28  NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDL 71


>02_04_0632 + 24614659-24615528,24615636-24616133
          Length = 455

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -3

Query: 520 PRLVNSSSCAGSVVPKVINASKYSA----DNGDD 431
           P L+     +G+  PK+ NAS Y+A    DNGDD
Sbjct: 75  PSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,280
Number of Sequences: 37544
Number of extensions: 285401
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)