Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b10
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    27   5.5  
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    27   5.5  
AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine re...    27   5.5  

>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
           protein ZK897.1 protein.
          Length = 1396

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 226 YNFFPFLWNIMIWSNLLERDRHSFKKFHGELCNTKAPKSDIL 101
           ++F  F+WNIM+ ++  E +   F++ H  L   +  K  +L
Sbjct: 34  FSFAVFVWNIMLGASSSEEEDDDFQEDHDSLPIAQVKKRSLL 75


>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 140 TMEFLEAMPVTFKEIAPNHNIPEKWKEIVLNTGGTHS 250
           T E L A+  T  EI  +    E+W  +  +TGG H+
Sbjct: 572 TGESLLALHCTDTEIVVSEKDQERWHRVTHHTGGAHA 608


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 140 TMEFLEAMPVTFKEIAPNHNIPEKWKEIVLNTGGTHS 250
           T E L A+  T  EI  +    E+W  +  +TGG H+
Sbjct: 580 TGESLLALHCTDTEIVVSEKDQERWHRVTHHTGGAHA 616


>AF038608-6|AAT92088.1|  312|Caenorhabditis elegans Serpentine
           receptor, class z protein82 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 248 STLQDIKLPQKAGGYWYKDSTKFYTRNRFIYWQTTSDAI 364
           STL  I + + A    Y  S  +Y+  ++IYWQT +  I
Sbjct: 198 STLFYIPILRSARRNPYVTSGHYYSLQKYIYWQTLTSLI 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,214,463
Number of Sequences: 27780
Number of extensions: 192844
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)