Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b10
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.0  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 348 VCQ*IKRFLV*NFVESLYQ*PPAFCGNLMSCKV 250
           +C      +V N +++LY+   +FCG L   KV
Sbjct: 503 ICSTATPMMVINMLQNLYEQFDSFCGQLDVYKV 535


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 MPVTFKEIAPNHNIPEKWKEIVLNTGGT 244
           +P+TF+ +  N+ I  +    V+  G T
Sbjct: 367 LPITFRCLEENNKIDSRVTRFVVAVGAT 394


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 273 GNLMSCKVL*VPPVLSTISFHFSGIL*FGAISLNVTGIASRNSM 142
           GN+ +C V+   P + T + ++   L    + L V G+ +  S+
Sbjct: 57  GNITTCTVIIKNPAMQTATNYYLFSLAISDLILLVLGLPNELSL 100


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 218 EIVLNTGGTHSTLQDIKLPQKAGGYW 295
           ++ +   G+   L   ++ QKA G+W
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGHW 79


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 218 EIVLNTGGTHSTLQDIKLPQKAGGYW 295
           ++ +   G+   L   ++ QKA G+W
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGHW 79


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 218 EIVLNTGGTHSTLQDIKLPQKAGGYW 295
           ++ +   G+   L   ++ QKA G+W
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGHW 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,000
Number of Sequences: 438
Number of extensions: 2662
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)