Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b09
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0437 - 19084990-19087695                                         29   2.3  
10_08_0366 - 17232010-17232061,17232546-17232601,17232692-172327...    29   4.0  
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417...    28   5.3  
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451     28   5.3  
08_02_0443 - 17207513-17207665,17207674-17207762,17207923-17208319     27   9.3  
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455...    27   9.3  
01_05_0744 - 24840172-24840327,24840476-24840564,24840856-248409...    27   9.3  
01_01_1127 + 8930593-8932681,8932812-8933401                           27   9.3  

>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 467 LHTKINLKNSIIYVKNLSYLSPLREISI 384
           LHT   +K S   V+NLSYL+ LR +SI
Sbjct: 677 LHTLKEIKASKNLVQNLSYLTQLRSLSI 704


>10_08_0366 -
           17232010-17232061,17232546-17232601,17232692-17232727,
           17232861-17232941,17233060-17233131,17233394-17233465,
           17233555-17233659,17233754-17233804,17234075-17234109,
           17234692-17234736,17234940-17234973
          Length = 212

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 224 LEEINPDLAEAFNALPAGRSAGKDVEA--APEIPEHYSSKLNVPENP 358
           L+EI  D+A   ++ P GR  GK V+A  + E+ E    +L   +NP
Sbjct: 167 LDEIGVDIASQLSSAPKGRITGKKVQADESSELDE-LEKRLAALKNP 212


>12_01_0526 -
           4171313-4171417,4171514-4171597,4171688-4171758,
           4171814-4171891,4174482-4174569,4174659-4174850,
           4174939-4175802
          Length = 493

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 227 EEINPDLAEAFNALPAGRSAGKDVEAAPEIPE 322
           +++N DL     + P GR   KDVEAA   P+
Sbjct: 200 KDLNVDLNSITGSGPGGRIVAKDVEAAAAAPK 231


>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
          Length = 511

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 275 GRSAGKDVEAAP-EIPEHYSSKLNVPENPEIGDSR 376
           GR A K  EAAP   P    S+ +VP  P  GD R
Sbjct: 18  GREARKSKEAAPPREPRRARSRSHVPPPPGAGDGR 52


>08_02_0443 - 17207513-17207665,17207674-17207762,17207923-17208319
          Length = 212

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 264 LCPPEEALVKMSKQPQKFPNTTHQNLM 344
           +C  ++A+ + SK P   P+TT +NL+
Sbjct: 78  MCDEQDAVFQDSKAPDATPSTTEENLV 104


>02_05_0869 -
           32344821-32344916,32345255-32345347,32345418-32345551,
           32345863-32346013,32346337-32346407,32346683-32346828,
           32347172-32347221,32347552-32347628,32347716-32347776,
           32347859-32347912,32347999-32348058,32348491-32348624,
           32349740-32350418
          Length = 601

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 173 PQAPGYVPVYIRSGDTPLEEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKL--NV 346
           P    +VP  + +   P+E++ P      N +P  ++   +V+A P++    + K    +
Sbjct: 455 PDLADFVPSGVPNSAEPIEKVTPTNVPRQNDVPKEKTCLPEVKAKPKVQNKGAEKTQSKI 514

Query: 347 PEN 355
           P N
Sbjct: 515 PTN 517


>01_05_0744 -
           24840172-24840327,24840476-24840564,24840856-24840928,
           24841006-24841089,24841355-24841505,24842145-24842227,
           24842358-24842504
          Length = 260

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 201 TSGAETRPSKKSIL-IWLKLSTLCPPEEALVKMSKQPQKFPNTTH 332
           T G +  P +K    IWL+  T  P E A + + K+P   P   H
Sbjct: 147 TQGLDLIPQQKPFSGIWLQRKTPKPMEHANLNLCKEPSTSPLPKH 191


>01_01_1127 + 8930593-8932681,8932812-8933401
          Length = 892

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 207 GAETRPSKKSILIWLKLSTLCPPEEALVKMSKQPQKFPNTTHQNLMCPKTQ 359
           G E  P+ + +  WLK   L  P+EA   +++  ++ PN+    L   K +
Sbjct: 331 GCEECPTNEDV--WLKACRLASPDEAKAVIARGVKEIPNSVKLWLQAAKLE 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,813,759
Number of Sequences: 37544
Number of extensions: 281431
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)