Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b08
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.9  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   2.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   3.3  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   4.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   10.0 
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   10.0 
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   10.0 

>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 351 LSLSGISKKHTIHSTVWILSGVQYY-FSVGSGFN 253
           +SLS    KH  HS +  +SG+ Y+  SVG+G +
Sbjct: 175 ISLSLTMNKHQGHSLLQTVSGLNYHTLSVGTGLS 208


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 382  RYLNFGSCHLP*SFRHQ 332
            R   FGSCH+P S RH+
Sbjct: 1038 RAKGFGSCHVPNSLRHK 1054


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 391  IPLFHHSHYVSPMAEVALTQIETIAQSENCVIAGY 495
            +P   H   V+ +  +  TQI  +A S +CV+AGY
Sbjct: 1133 LPAKTHDERVTAVTVIRCTQI--VALSSSCVMAGY 1165


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 211 TALVSNNHKMSEVSIETGAYAKIILHAAKYPHCAVNGVLLA-DAGKTK-EGGRNQSLDIV 384
           T   SN    + VS    A  + +L ++  P   +NG L + D+  T  +  RN   D  
Sbjct: 115 TEATSNERPFNPVS---AANLERLLMSSTGPQTPINGELKSNDSQDTAFQSSRNMPSDTS 171

Query: 385 DAIPLFHHSHYVSPMA 432
            A P + HS   SP+A
Sbjct: 172 VASPDYSHSQSSSPIA 187


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 23/90 (25%), Positives = 38/90 (42%)
 Frame = +1

Query: 223 SNNHKMSEVSIETGAYAKIILHAAKYPHCAVNGVLLADAGKTKEGGRNQSLDIVDAIPLF 402
           SN+      S E  AYAK       Y    +  +L  +       G+N+ L+++D    F
Sbjct: 64  SNSKNAERHSGEIQAYAKFAGSTWTYYVKKIRIILGREPANPSPKGKNEDLEVIDM--NF 121

Query: 403 HHSHYVSPMAEVALTQIETIAQSENCVIAG 492
             S  VS   + A+ + +   Q+ NC + G
Sbjct: 122 GPSKVVS--RKHAVVEYDLDDQTWNCSVYG 149


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -1

Query: 464 AMVSICVSATSAIGET*WLWWNSGIASTISKLWF 363
           A++SIC+S+T+   +  W++    + + I+ + F
Sbjct: 524 AILSICISSTAVNPKLTWMYTGIAVTAFIAGIMF 557


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 310 AVNGVLLADAGKTKEGGRNQSLDI 381
           A+ G+LL   G TKEG  N  L +
Sbjct: 48  AIKGILLHSLGNTKEGYDNVRLGL 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,462
Number of Sequences: 5004
Number of extensions: 37735
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)