Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b07
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    26   4.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    26   5.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   9.7  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   9.7  

>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 425 KKTCRYFNIV*ELWHIQCFLFD*LNYILV*V*KSC*KVKFSENIIVNLHPHL*IVNTNFN 604
           K  C +F I  E WH+   L+D   YI + +     K+  +  I  N H  + ++N  + 
Sbjct: 54  KLKCTFFMI--EEWHLLAILYDKSKYIKIIICSVLLKLNTTVIIRRNTHTKVYVMNKFYQ 111

Query: 605 RI 610
           ++
Sbjct: 112 KL 113


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 299 IVNSDENKRSWAESQRKIAEK 361
           +V++DE+ R WAE +R + +K
Sbjct: 122 VVSADESARLWAEKRRFLLQK 142


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 293 HVIVNSDENKRSWAESQRKIAEKEA 367
           H+   SD++KR  AE +R+  E+EA
Sbjct: 371 HIYEPSDDDKRIMAEMERERKEREA 395


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 14  VNDPSSTNINKYFEIDYVGIMVSKVLVGIYVNMEKSLRAAGVI 142
           VND  S   N+Y     + I +SK L+G   +++K + A GVI
Sbjct: 431 VNDAISAAANEYVSPKSMTIDLSKTLLG--DDIKKEVNALGVI 471


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 173 PYTLSAKIAQFPLFYYMKNNIIWMYYPLGILTGFY 277
           P+ L+ K     L   MK+NI+ ++Y L +   FY
Sbjct: 534 PHFLATKGQPLLLLSVMKSNILRLFYVLFLFACFY 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,986
Number of Sequences: 5004
Number of extensions: 54904
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)