Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b07
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130...    31   0.81 
06_01_0920 + 7098007-7098065,7098538-7099345                           29   3.3  
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187...    29   3.3  
12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076...    29   4.3  
01_06_0193 - 27359575-27361962                                         29   4.3  
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    28   7.6  

>02_04_0046 +
           19211961-19212231,19212651-19212706,19212947-19213011,
           19213138-19213212,19213305-19213383,19213591-19213629,
           19213712-19213820,19214334-19214452,19215282-19215401,
           19215846-19216232
          Length = 439

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 301 NHMNFHEKIKPR*NPKRIVHPYDIILHIIEQRKLRYFC*QCVWIFHMP 158
           N M +H  +KP  N   IV  YDI++   +    RY    C  + + P
Sbjct: 137 NVMEYHHTLKPS-NALEIVRKYDIVVDATDNLPTRYMISDCCVLLNKP 183


>06_01_0920 + 7098007-7098065,7098538-7099345
          Length = 288

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 409 INSACSCNYI*SMVGFF-FCNL 347
           I+  C+CNYI   + FF FCNL
Sbjct: 58  ISQTCNCNYIYMTLNFFRFCNL 79


>01_06_0006 -
           25517892-25517935,25518156-25518276,25518598-25518733,
           25519189-25519280,25519358-25519426,25519710-25519821,
           25519897-25520015,25520302-25520355,25520811-25520891,
           25520968-25521051,25521124-25521315,25521633-25521746,
           25521832-25521978,25522066-25522302,25522762-25522810,
           25522894-25523027,25523124-25523324,25523532-25523701,
           25523773-25523875,25524198-25524361,25525015-25525055,
           25525144-25525187
          Length = 835

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 125 RAAGVIAGKSGRHMKYPYTLSAKIAQFPLFYYMKNNIIWMY 247
           R+   +   +G H+K+P+ L ++I    LF + K+ + W++
Sbjct: 179 RSGAFVIAATGHHIKHPFLLPSEIFS-SLFPHQKDGLEWLW 218


>12_02_0781 +
           23105554-23106855,23107191-23107511,23107581-23107667,
           23107907-23108302,23108327-23108500,23108600-23108764,
           23108857-23109151,23109319-23109446,23109681-23109986,
           23110531-23110591,23110676-23110915,23111251-23111372
          Length = 1198

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +2

Query: 47  YFEIDYVGIMVSKVLVGIYVNMEKSLRAAGVIAGKSGRHMKYPYTLSAKIAQFPLFYY 220
           YF    VG+ V  +L       ++ L  +      SG  M Y    + +I +FP +++
Sbjct: 122 YFRTRRVGVQVRSLLSAAIYRKQQKLSCSASTEHSSGEIMNYLMVDTYRIGEFPFWFH 179


>01_06_0193 - 27359575-27361962
          Length = 795

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 12/100 (12%)
 Frame = +2

Query: 101 YVNMEKSLRAAGVIAGKSGRHMKYPYTLSAKIAQFPLFYYMKNNIIWMY-YPLG------ 259
           Y+ + K++ +  +I+   G   K P      +     +    +NI+W Y Y         
Sbjct: 403 YIKLPKNVASTSLISKHHGLTCK-PNASKVMLVSIDAYRKNSDNIMWAYLYVFATIIGAV 461

Query: 260 ----ILTGFYFFMKIHVIVNSDENKRSWAESQ-RKIAEKE 364
               I+TG+YF  K+H I  S E       SQ R+   +E
Sbjct: 462 ELVFIMTGWYFLFKMHNIPKSMEKGYKMITSQFRRFTYRE 501


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 194 IAQFPLFYYMKNN-IIWMYYPLGILTG 271
           ++ +P +YY+  N ++W++  LG+L G
Sbjct: 405 LSLYPKYYYLDENMVVWLWKLLGLLQG 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,416
Number of Sequences: 37544
Number of extensions: 273448
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)