Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b06
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.5  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.5  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   2.0  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   2.0  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    27   2.6  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   3.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    25   8.1  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   8.1  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 346 NDT*NFLFGRFIVLHKFWHFVFIQRPC 266
           NDT + LF   + LH F+H++ ++  C
Sbjct: 602 NDTSDLLFHSNVSLHLFYHYLIVKVSC 628


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = -2

Query: 300 NFGILYLFNVLVGPKIPYTAIIVQ*ITVKVLKSGLSRKISLYCLMYFERVITSK 139
           N   L++F +L+GP   Y A +V+ + V V +  + R  +    M +++V+TSK
Sbjct: 299 NSPFLWVFVLLIGP---YLASVVKELYVHVSRRFMLRIKAAITQMIYKKVLTSK 349


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +2

Query: 77  ILLISMNIIQMVSI--LFLLLPIFDVITLSKYIKQYKEILRDRPLFRTFTVIYCTIIAVY 250
           +L+I+M +I+++ +  L + L   D ++L+  I   ++ +RD     T  ++  TI+ +Y
Sbjct: 393 VLIITM-LIELLHVGGLRIALSNRDDLSLTPLINFLRKYIRDPRFSETLCIVTSTILDIY 451

Query: 251 G 253
           G
Sbjct: 452 G 452


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 347 DSTNA-IRNYLLSGFSLCFVLVIWRSLDLIIFSAKLH 454
           +STN  ++N+    F   FVLVIW+ L L  F  + H
Sbjct: 177 ESTNERVKNFAYLTFISLFVLVIWQILYLRSFFQRKH 213


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 108 WYPFYFYCCLFSMLLLSR 161
           W  F+F CCL S LL ++
Sbjct: 240 WRTFFFLCCLLSPLLTAK 257


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 98  YSWKSIISLCSLILTFYLKQK 36
           YSW   +SLC+L+ ++ L  K
Sbjct: 303 YSWTGTVSLCNLVSSWILNTK 323


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 83  LISMNIIQMV-SILFLLLPIFDVITLSKYIKQYKEILRDRPLFR 211
           L++ ++++++ S L LLL I    T+SK  KQ   + +DR LFR
Sbjct: 125 LLNSSVLEVIDSTLALLLHIVQKATISKRGKQLFSLSQDR-LFR 167


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 104 QMVSILFLLLPIFDVITLSKYIKQYKEILRDR 199
           Q+ + L  L+P+ D      Y+++Y +++RDR
Sbjct: 241 QLQTSLRNLVPLLDYNNPELYLRRYIQVIRDR 272


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 257 LGPTRTLNKYKMPKFV--KDNETPEQKVLRIIDSTNA 361
           L P+  ++++    F+  KDN  P +++ ++ID  NA
Sbjct: 40  LNPSSRISQWPRITFIRAKDNYNPAEELCQLIDEQNA 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,190
Number of Sequences: 5004
Number of extensions: 48989
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)