Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b06
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799...    31   0.67 
07_01_1153 - 10842259-10842390,10843348-10845315                       30   1.5  
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           29   3.6  
05_03_0240 + 10813886-10814060,10814164-10814275,10814901-108150...    29   3.6  

>01_06_1440 +
           37378121-37378958,37379344-37379494,37379567-37379936,
           37380021-37380431,37380522-37380820,37380897-37381155,
           37381248-37381497,37381744-37381875,37381936-37382208,
           37383023-37383267
          Length = 1075

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
 Frame = +2

Query: 143 DVITLSKYIKQYKEILRDRPLFRTFTVIYCTIIAVYGILGPTRTLNKYKMPKFVKDNETP 322
           D + LS ++   K I  DRP  RTF  IY  ++  + I     T++   +     +    
Sbjct: 21  DGVDLSDFVMTSKGI--DRPAERTFQSIYSWLLRGFRIDQEVYTMSVSVVVSRATEGYFW 78

Query: 323 EQKVLRIIDSTNAIRNYLLSGFSLCFVLVIWRSLDL--IIFSAKLHELYDLMRNYDLIDI 496
           E   L  +DST+A R Y+   F   + LVI+ S+    I  S +  ++   +   D++  
Sbjct: 79  E---LMPMDSTDAWRRYVEMAFERSWPLVIFVSVQEKDINVSMQTEDVEGPINAGDVVGP 135

Query: 497 TLMTEVEEKRDNES 538
           ++  E  + R+ ++
Sbjct: 136 SMQNEENQPREEQA 149


>07_01_1153 - 10842259-10842390,10843348-10845315
          Length = 699

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 212 TFTVIYCTIIAVYGILGPTRTLNKYKMPKFVKDNETPEQKVLRII 346
           T  V +C +   + I  P   +N  K+PK  +    P  KVL I+
Sbjct: 250 TINVRHCVLGWSFAINSPASAINLGKLPKLPRMGPKPRSKVLEIV 294


>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = +2

Query: 224 IYCTIIAVYGILGPTRTLNKYKMPKFVKDNETPEQKVLRIIDSTNAIRNYLLSGFSLCFV 403
           +YC +    GI  P   ++  K+PK  + +  P  K+L II         L+ G ++  V
Sbjct: 252 LYCVLGLSLGINRPAPAIDLSKLPKLPRVSPKPRTKLLEIILPIATATFILIVGTTI--V 309

Query: 404 LVIWRSLDLIIFSAKLHE 457
           L++ R +      A+LHE
Sbjct: 310 LLVRRRMRY----AELHE 323


>05_03_0240 +
           10813886-10814060,10814164-10814275,10814901-10815077,
           10815287-10815413,10815529-10815642
          Length = 234

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 269 RTLNKYKMPKFVKDNETPEQKVLRIIDSTNAIRNYLLSGFSLCFVLVIWR 418
           RTL +  +P  V+ N+TPEQ   R++   + +  Y+ +  +LC   ++WR
Sbjct: 172 RTLAQRVVP--VQANDTPEQLATRVLHEEHQV--YVEAVTALCEDRIVWR 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,275,748
Number of Sequences: 37544
Number of extensions: 243556
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)