Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b06
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H...    31   0.79 
AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchange...    31   0.79 
AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchange...    31   0.79 
AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical ...    30   1.0  
U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger ...    30   1.4  
AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H...    30   1.4  
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    29   2.4  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    29   2.4  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z75549-1|CAA99917.1|  424|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF039050-9|AAC47940.1|  499|Caenorhabditis elegans Cytochrome p4...    27   7.4  
Z95559-13|CAB09003.2|  682|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    27   9.7  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    27   9.7  

>AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H
           exchanger isoform 6 protein.
          Length = 533

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 206 FRTFTVIYCTIIAVYGILGPTRTLNKYKMPKFVK 307
           F   TV++C I    G++     LNKY++ K+ K
Sbjct: 366 FIVLTVVFCLIYRTLGVVVMCHFLNKYRLNKYTK 399


>AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform a protein.
          Length = 538

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 206 FRTFTVIYCTIIAVYGILGPTRTLNKYKMPKFVK 307
           F   TV++C I    G++     LNKY++ K+ K
Sbjct: 366 FIVLTVVFCLIYRTLGVVVMCHFLNKYRLNKYTK 399


>AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform b protein.
          Length = 634

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 206 FRTFTVIYCTIIAVYGILGPTRTLNKYKMPKFVK 307
           F   TV++C I    G++     LNKY++ K+ K
Sbjct: 366 FIVLTVVFCLIYRTLGVVVMCHFLNKYRLNKYTK 399


>AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical
           protein T15B7.11 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 76  DIIDFHEYYTNGIHFIFIAAYFRCYYSLEIHQAIQGNFTRQAALQNFYRNLLYDY 240
           ++ID+  YY N   F+ + ++F    S  I+ ++   F R  A     +NLL  Y
Sbjct: 289 EVIDYLNYYQNLTIFMNVLSFFNTTTSFIIYSSLSAKFRRIFAQTFLPKNLLNMY 343


>U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger
           protein 2 protein.
          Length = 627

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 206 FRTFTVIYCTIIAVYGILGPTRTLNKYKMPKFVK 307
           F   TV++C I    G++     LNKY++ K+ K
Sbjct: 348 FIVLTVVFCLIYRTLGVVVMCYFLNKYRLNKYTK 381


>AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H
           exchanger isoform 2 protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 206 FRTFTVIYCTIIAVYGILGPTRTLNKYKMPKFVK 307
           F   TV++C I    G++     LNKY++ K+ K
Sbjct: 365 FIVLTVVFCLIYRTLGVVVMCYFLNKYRLNKYTK 398


>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical
           protein H05L14.2 protein.
          Length = 2162

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 143 DVITL-SKYIKQYKEILRDRPLFRTFTVI--YCTIIAVYGILGPTR 271
           +VI L  K IK++ ++ RD   F  F ++  YCT   + GILG T+
Sbjct: 4   EVIELFEKIIKRFGKLKRDMIPFEIFKLVTLYCTSQDIRGILGNTQ 49


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
           protein H05L14.2 protein.
          Length = 2162

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 143 DVITL-SKYIKQYKEILRDRPLFRTFTVI--YCTIIAVYGILGPTR 271
           +VI L  K IK++ ++ RD   F  F ++  YCT   + GILG T+
Sbjct: 4   EVIELFEKIIKRFGKLKRDMIPFEIFKLVTLYCTSQDIRGILGNTQ 49


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 110 VSILFLLLPIFDVITLSKYIKQYKEILRDRP 202
           VSIL++L+ IF V+ L K  ++ K +  D+P
Sbjct: 242 VSILYILVTIFLVVELQKTKRRRKNLRNDKP 272


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
           protein C18H2.5 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 326 QKVLRIIDSTNAIRNYLLSGFSLCFVLVIWRSLDLIIFSAKLHELYDLMRNYDLI 490
           ++  RI +STN  ++ LL    L   L+   S D ++   K+H+ +D + N   I
Sbjct: 107 ERYKRIYESTNGDKDDLLRILKLNEDLMTSVSSDYVVNKTKIHDFFDHLGNNSTI 161


>Z75549-1|CAA99917.1|  424|Caenorhabditis elegans Hypothetical
           protein T19C4.1 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 95  NIIQMVSILFLLLPIFDVITLSK----YIKQYKEILRDRPLFRTFTVIYCTIIAVY-GIL 259
           N++ +V  LF L P+F  I        ++   + IL D  L  +F VI  TI+A Y  +L
Sbjct: 330 NVVAVVPFLFGLFPVFPYIFPKADGKLFVSDNEPILLD--LLLSFLVILQTILAFYMSVL 387

Query: 260 G 262
           G
Sbjct: 388 G 388


>AF039050-9|AAC47940.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein34A10 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 340 YH*FYKRYQKLLTVWIFPL 396
           YH F K Y K+ T+W+ PL
Sbjct: 55  YHEFEKTYGKVFTIWMGPL 73


>Z95559-13|CAB09003.2|  682|Caenorhabditis elegans Hypothetical
           protein Y41E3.1a protein.
          Length = 682

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 461 YDLMRNYDLIDITLMTEVEEKRDNESCLIDEN 556
           YD++R+   +D   M+ V +  D   C+ID+N
Sbjct: 638 YDIVRDEVKLDFGSMSHVNKFGDTPHCIIDKN 669


>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 55  VNIRLHSDIIDFHEYYTNGIHFIFIAAYFRCYYSLEIHQ 171
           V +++H+ +IDF+  Y+N  + + I  ++R Y    ++Q
Sbjct: 262 VLMQIHNRLIDFNRVYSNNTYLLMI--HYRGYRKFALNQ 298


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 55  VNIRLHSDIIDFHEYYTNGIHFIFIAAYFRCYYSLEIHQ 171
           V +++H+ +IDF+  Y+N  + + I  ++R Y    ++Q
Sbjct: 262 VLMQIHNRLIDFNRVYSNNTYLLMI--HYRGYRKFALNQ 298


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/70 (17%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 92  MNIIQMVSILFLLLPIFDVITLSKYIKQYK--EILRDRPLFRTFTVIYCTIIAVYGILGP 265
           +N +Q++ + F L+P+   ++    + +YK   + +   +  +  +++     +Y  +G 
Sbjct: 528 LNCLQLIQLPFALIPVLTFVSDRNIMHEYKLASVSKVVSIVISLIILFINFYFLYSWIGS 587

Query: 266 TRTLNKYKMP 295
           T   N   +P
Sbjct: 588 TFGYNAVSIP 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,004
Number of Sequences: 27780
Number of extensions: 261079
Number of successful extensions: 767
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)