Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b04
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    28   1.1  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   1.9  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    26   4.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.9  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   5.9  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   7.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   7.8  

>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +3

Query: 285 NESTNEEVVIFLTHAWDSISESQKIFTAKE--LDYFRLLIEEIMSIDVREITGIHAINLV 458
           +E++   VV  ++  W  + E QK+   +   ++YFR   EE+ S    EI      + V
Sbjct: 33  SETSTPGVVPSVSTLWRLLFELQKMIECEPSCVEYFRQRKEELESHVDSEIETSKDESSV 92

Query: 459 NKMGQKISMLQAENL 503
           NK+ +K+   + +N+
Sbjct: 93  NKVEEKVEEFKEDNV 107


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 375 LDYFRLLIEEIMSI--DVREITGIHAINLVNKMGQKISMLQAENLL 506
           LD  R  IE+ +S+  DVR+    H + + NK+ ++I  L  +N L
Sbjct: 683 LDLLRKQIEDSISLHRDVRDSKDAHILKVSNKLRKQILHLVEQNCL 728


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 336 SISESQKIFTAKELDYFRLLIEEIMSIDVREITGIH 443
           SISE  ++F   EL+   LL   I  +D  +  G+H
Sbjct: 474 SISEKNEVFLLTELNVSTLLQPGINHVDCHDNIGLH 509


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 627 NLSLHQACISQNNLQIHLWFSHLSGIYFVSSLSSTFYTI 511
           NL   ++CI+ +++    W S L G+ F S L + FY +
Sbjct: 561 NLLCVRSCIAIDSIS---WISSLQGVKFRSKLMAYFYPL 596


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 498 NLLAKWCKMYYLEKIQNKYRLGVRTINEFEDYF 596
           +LLAK   + Y EKI  K  L + T+N F D F
Sbjct: 605 SLLAK--SLVYGEKILGKPNLSLHTLNHFLDKF 635


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 213 LLKNCIQEINDVIRPYQQSIKVTYNESTNEEVVIFLTHAWDSISESQKIFTAKELD 380
           L+K  I    +  +  +  +K T ++  N   V F     D++SES+K  +  +LD
Sbjct: 380 LVKGKISTDMEECKVSKSILKTTPSKKANARSVSFTQTTTDTLSESEKFASNVDLD 435


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 231 QEINDVIRPYQQSIKVTYNESTNEE 305
           Q I +V+ PY + +  + N++TN E
Sbjct: 262 QSIAEVLNPYNKGVSRSLNDATNME 286


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 606 CISQNNLQIHLWFSHLSGIYFVSSLSST 523
           CI  N +QI++W+     I+F   L  T
Sbjct: 334 CILPNQIQIYVWYGASISIFFALILLRT 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,940
Number of Sequences: 5004
Number of extensions: 56001
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)