Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b04
         (689 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018938-1|AAH18938.3|  256|Homo sapiens NSMCE1 protein protein.       81   4e-15

>BC018938-1|AAH18938.3|  256|Homo sapiens NSMCE1 protein protein.
          Length = 256

 Score = 81.0 bits (191), Expect = 4e-15
 Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 7/195 (3%)
 Frame = +3

Query: 117 VHRYFLRTIASSGVMSVDEAHRVLTKF------TGEPILLKNCIQEINDVIRPYQQSIKV 278
           VHR FL+ + + GV+   +  R+ T        +     L++ I  IN V+      IK 
Sbjct: 4   VHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRSATVDKLEDFINNINSVLESLYIEIKR 63

Query: 279 TYNESTNEEVVIFLTHAWDSISESQKIFTAKELDYFRLLIEEIMSIDVREITGIHAINLV 458
              E     +   +  A  SIS+    F   ELD FR  +E I+  +    +  + +NLV
Sbjct: 64  GVTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNILNLV 123

Query: 459 NKM-GQKISMLQAENLLAKWCKMYYLEKIQNKYRLGVRTINEFEDYFEKYMPDVMKDCYI 635
           +++ G+K+   +AE +L K+ +  +L + + ++ L  R I E E Y  +  PD +K C I
Sbjct: 124 DQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNI 183

Query: 636 CKKNVFWGANCIACG 680
           C   +  G +C  CG
Sbjct: 184 CHSLLIQGQSCETCG 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,999,446
Number of Sequences: 237096
Number of extensions: 1761522
Number of successful extensions: 3858
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3856
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)