Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b04
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    33   0.25 
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      29   2.4  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    29   2.4  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    29   4.1  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    28   7.2  

>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical
           protein ZK593.4 protein.
          Length = 1477

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +3

Query: 447 INLVNKMGQKISMLQAENLLAKWCKMYYLEKIQNKYRLGVRTINEFEDYFEKYMPDVMKD 626
           +  ++K+G  +S+   E L+  + K   L ++    RLGV      +  FEK +PD  + 
Sbjct: 652 VEAMDKLGISMSLATHEELIRIYEKQKMLRELLA--RLGVSNRQMQQVMFEK-IPDEQRS 708

Query: 627 CYICKKNVFWGANCIACGK 683
           C  CK  +F  A  + C K
Sbjct: 709 CRFCKTTLFMCA--LVCNK 725


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 429 ITGIHAINLVNKMGQK---ISMLQAENLLAKWCKMYYLEKIQNKYRLGVRTINEFEDY 593
           IT +H + +  K+G+K   + ++  +N++  W K +    + N   L    +NE + Y
Sbjct: 507 ITFLHTVLMHEKIGEKCKRVLVVVPKNVIINWFKEFQKWLVDNDEELDTIDVNELDSY 564


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 429 ITGIHAINLVNKMGQK---ISMLQAENLLAKWCKMYYLEKIQNKYRLGVRTINEFEDY 593
           IT +H + +  K+G+K   + ++  +N++  W K +    + N   L    +NE + Y
Sbjct: 507 ITFLHTVLMHEKIGEKCKRVLVVVPKNVIINWFKEFQKWLVDNDEELDTIDVNELDSY 564


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 333 DSISESQK-IFTAKELDYFRLLIEEIMSIDVREITGIHAINLVNKMGQKISMLQAENLLA 509
           DS+ E+ + + T KE+DYF L + + M+  ++ +   H  +L   + Q+IS       L 
Sbjct: 428 DSMLEAGEFVKTKKEVDYFELALHD-MTGHLKNVKS-HLNSLRLGVPQEISPFGPSCCLN 485

Query: 510 KWCKMYYLEKIQNKYR 557
           K  +   +EKI+NK +
Sbjct: 486 KEERKICIEKIENKLK 501


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
           roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 322 VKNITTSSFVLSLYVT--LIDC*YGLITSLIS*MQFFNKIGSPVNLVRTR*ASSTL 161
           ++++TT      + +T  LI C   LITSLIS +++ +    P N ++   +  T+
Sbjct: 586 IEHVTTDILPACVMITEELIPCLESLITSLISLLEYRDSTNWPENAIKAASSYDTM 641


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,588
Number of Sequences: 27780
Number of extensions: 297158
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)