Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b04
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 683 FSTCYAVSPPKNIFLTNVTIFHYI 612
           FST  ++  P N+F+ ++ IF  I
Sbjct: 82  FSTSKSLRTPSNMFIVSLAIFDII 105


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 683 FSTCYAVSPPKNIFLTNVTIFHYI 612
           FST  ++  P N+F+ ++ IF  I
Sbjct: 82  FSTSKSLRTPSNMFIVSLAIFDII 105


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 306 VVIFLTHAWDSISESQKIFTAKELDYFRLLIEEIMSIDVREITGIH 443
           V+   T + DS ++  K+  A  LD+F L+        + E  G+H
Sbjct: 284 VLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCIATLLEFAGVH 329


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 318 LTHAWDSISESQKIFTAKELD 380
           L H  D +S+ Q+  T KE+D
Sbjct: 229 LNHNSDKMSDQQENLTLKEVD 249


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
 Frame = +3

Query: 471 QKISMLQAENLLAKWCKMYYLEKIQNKYRLG--VRTINEF-------EDYFEKYMPDVMK 623
           +KI M + EN+   +  +     I + Y     V+ +NE         + FE+    ++ 
Sbjct: 262 KKIYMSRHENVSILYADIVGFTAISSTYSASELVKILNELFARFDQLSERFEQLRIKILG 321

Query: 624 DCYIC 638
           DCY C
Sbjct: 322 DCYYC 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,033
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)