Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13b03
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     26   5.1  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.7  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   8.9  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   8.9  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   8.9  

>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 448 LRNKTLRTSKRRKVGPKANGRNTWIT 525
           + ++ L    ++ + PKANG+  W+T
Sbjct: 124 VEDRKLSDDSQKPLAPKANGKEKWVT 149


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 180 NILSVPRKYIIDTGEGMPAYTPRGIRKSALN-SQLSDRVHDVS 305
           N + +PR++  DTG  +  +T       ++N +QL    H ++
Sbjct: 232 NFMGLPREFFTDTGNYVLRFTSTSAANGSVNENQLLQAAHGIA 274


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 517 MCFFHSLSVQPFFFLTSLVSCFLRSI 440
           + F HSL V  FF  +   SC +RS+
Sbjct: 64  LVFLHSLIVARFFVASKSRSCIVRSL 89


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = +2

Query: 329 NIKKDLQAEV*RGTLGAYRSND*GSECDVLLEARQLC----NRS*ETRH*GRQKEERLDR 496
           N  +D QA++    L A +  +   +   L+E R+       +S E RH  R      DR
Sbjct: 125 NSLQDTQAKLRLDPLLAIKQQE-QKQLQTLMEKRKYSLDSDRKSKERRHRDRHHRSNQDR 183

Query: 497 KRMEETHGLHQSDSR 541
            R    +  H SD R
Sbjct: 184 SRERSDNEQHSSDKR 198


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 141 PTNTFPYKIAKRLNILSVPRKYIIDTGEGMPAYTPRGIRK 260
           P+ +  Y IA  +++L V   + ++ G G P     G+RK
Sbjct: 29  PSRSSLYLIALTVSLLGVQLTWSVELGYGTPYLFSLGLRK 68


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 206 HYRYRRRNAGLYPEGDKEVGI 268
           HY    RN G  P+GD +VGI
Sbjct: 61  HYN-NPRNVGTLPKGDPDVGI 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,473
Number of Sequences: 5004
Number of extensions: 55036
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)