Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a22
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   1.6  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   3.7  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    26   4.9  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.9  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   6.5  

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +2

Query: 401 AYDRVQVIPDWVMDYWHP-----LEKAHYPEYFKRR 493
           A+D      +W+ DY HP     ++++ YP++  R+
Sbjct: 283 AFDLANYFAEWMADYHHPTHNYLMDRSRYPDFNARK 318


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 239 HQVILRNELDKNKAVCDPKEHRRLLRVAENELFMSQHPIPVAKFARSVGIAG 394
           H+  L  + D N    DPK H  +  V+EN++      +  +    ++ +AG
Sbjct: 822 HKASLSKDTDTNSVTSDPKPHPFVPSVSENKILNRSFSLTRSLKGLALSLAG 873


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +2

Query: 95  LVCRSFSNITEMSFAPELRSHSQKVCNFYKRAMRTLEAYHVARYVIRYHQVILR--NELD 268
           + C S SN+T  S  P + ++ + +   ++  +R   A   A   +    V  R  +E  
Sbjct: 514 IFCYSLSNLT-YSELPRVNTYVRAMA--FRPDVRGRLAVATAGNQVYEFDVQSRKLSEWS 570

Query: 269 KNKAVCDPKEHRRLLRVAENELFMSQHP 352
           KN +   PKE  +LL  A    F S+HP
Sbjct: 571 KNNSTNMPKEFSQLLDKAFGAFFDSKHP 598


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -3

Query: 553 KKLTYFTVIPFLNVFTFPTLASLEIFRIMCLF*RMPIIHYPIRYHLNTIVGYTAGNTHRS 374
           K++ Y+ +  + +VF+      L I+  +C F R+ I H   R+ L     +T    H +
Sbjct: 25  KEIMYWNICLYWDVFS-----KLIIYNKVCQFGRIHIFHGKNRHQLLRTCHFTPSKRHSA 79

Query: 373 SKF 365
             F
Sbjct: 80  MSF 82


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -1

Query: 159 EWLLSSGAKDISVI-LENERQTSTYKV 82
           +W+L+ GAK +S+  +ENE + S +++
Sbjct: 84  DWILNDGAKTLSLCGIENETELSYFEL 110


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 547 LTYFTVIPFLNVFTFPT 497
           LT   + P LNVFTFPT
Sbjct: 55  LTRLIIGPSLNVFTFPT 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,595
Number of Sequences: 5004
Number of extensions: 44211
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)