Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a22
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0129 - 20397179-20397537,20397749-20400497                       28   5.0  
05_01_0316 + 2476689-2477030,2477164-2477283,2477742-2477819,247...    28   5.0  
04_03_1042 - 21950444-21950572,21952137-21952229,21952348-219524...    28   5.0  

>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 387 IPTDLANLATGIGC*LINNSFSATLNNRRCSLGSQTALFLSNS 259
           IP+ + NL   I   L++N+FS  L N   +L   T L LS++
Sbjct: 458 IPSTIGNLTELITLYLMSNTFSGRLTNSLANLTKLTELDLSSN 500


>05_01_0316 +
           2476689-2477030,2477164-2477283,2477742-2477819,
           2477956-2478132,2478317-2478394,2478694-2478866,
           2478994-2479149,2479573-2479633,2479831-2480049
          Length = 467

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 156 WLLSSGAKDISVILENERQTSTYK 85
           W  S    D+SV+ ENE++TS Y+
Sbjct: 435 WEASGDEDDLSVLTENEQRTSPYR 458


>04_03_1042 -
           21950444-21950572,21952137-21952229,21952348-21952445,
           21952984-21953047,21953145-21953315,21954004-21954849
          Length = 466

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 356 PVAKFARSVGIAGGVAYDRVQVIPD 430
           PVAK AR+ G  G  A DR+  +PD
Sbjct: 3   PVAKRARTGGGGGSAAVDRLSSLPD 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,330,570
Number of Sequences: 37544
Number of extensions: 247852
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)