Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a20
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    30   0.36 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   1.9  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   2.6  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   4.5  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   7.8  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   7.8  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -2

Query: 255 DVLKNILYIYITMNKKNHFNNIFCTIYFYKFIKLITKEYTVFARSILP 112
           D+  +I    + +N+++  NNI  T+  Y F  +I +++  F  ++ P
Sbjct: 792 DMCSSIQNSVVIINEESFMNNIDITVELYHFFSIILQKHPSFLETMYP 839


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = -3

Query: 377 WSPTKPGPLPP---STGYPQIDSPALKKATSE 291
           W   KP PLPP   S G P I +P +    S+
Sbjct: 114 WPSLKPHPLPPKRVSLGIPSISNPPVDTVISD 145


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 126 RSILPIYFISDEGS*RLNRIEMYSYNF 46
           ++++PI  +SDE + +LN +   +Y+F
Sbjct: 350 KAVIPIVILSDEDTSKLNELSKEAYSF 376


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 161 INL*KYIVQK-MLLKWFFLFIVIYIYRMFFKTSQ*EDGLAFSLPIRW 298
           +NL  YI Q   L KWFF  +   +   FFK    + G++   P  W
Sbjct: 1   MNLFVYIAQNPTLTKWFFCCVCTILTMPFFKKPYRKRGIS-RTPYEW 46


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -2

Query: 366 KTRSVTPLDRVSANRFPSVKKSYQRIGREK-ANPSSY*DVLKN 241
           ++RSVTP++ ++  ++    +     GRE+ +N +SY D+ ++
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNRNSYSDLSRS 701


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 280 FSSYSLVAFFNAGESICGYPVEGGNGPGF 366
           F     ++FF A +++ G PVEG    GF
Sbjct: 197 FQGILFISFFYALKTMAGVPVEGFTDGGF 225


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 193 VIKMVFFVHCNIYIQDVL*NISVRRRIGFFSSYSLVAFFNA 315
           VI  ++ V C I++   L  I   + I FFSS + V +FN+
Sbjct: 237 VIPPIYKVQCMIHL---LCTIEYEKAIVFFSSCASVEYFNS 274


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 447 NSIEFVAERLTAHTYYICTRCETKSADSAHSAPFVISKMKGSRQCN 584
           +S+EF A   +    Y+ T  E  + DSA S  + + K      CN
Sbjct: 502 DSLEFAAPYQSELNNYLKTLAEASATDSAISQQYALVKDDVETLCN 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,730
Number of Sequences: 5004
Number of extensions: 49705
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)