Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a16
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14...    29   1.9  
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233...    28   5.8  
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426...    28   5.8  
01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-17...    27   7.6  

>05_01_0020 +
           143273-143592,144278-144371,144466-144537,144675-144786,
           145179-145327,145484-145510,145931-145981
          Length = 274

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 123 NAPDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMD 248
           N PDD +E E M E   LEAD+    +   + + P  + D+D
Sbjct: 187 NVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKESDLD 228


>06_03_0697 -
           23621808-23622127,23622194-23622932,23623298-23623327,
           23624183-23624200,23625176-23625268,23625665-23626123
          Length = 552

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 138 HHLVRSTFSTA-TSTRPMKIYLPNFDYENQRF 46
           H ++   FST+ T  RPM + LP+  Y N  F
Sbjct: 324 HPILDGNFSTSGTIQRPMNVELPSLQYPNYDF 355


>01_01_0574 +
           4263247-4263615,4263945-4263992,4264308-4264514,
           4264670-4264826,4264958-4265041,4265785-4265909,
           4268100-4268218,4268535-4268619,4269087-4269134
          Length = 413

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 248 SVCASRLATGNDVYTRGVTSGENANFG 328
           ++C  +  TG D+Y RG+  G + N G
Sbjct: 300 NICLGKHFTGADMYFRGIRCGNHVNSG 326


>01_01_0022 -
           170045-170095,170406-170554,170764-170875,171398-171469,
           171578-171671,171770-171921,172004-172072
          Length = 232

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 123 NAPDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMD 248
           N PDD +E E M E   LEAD+        + + P  + D D
Sbjct: 154 NIPDDVDEEELMGELDALEADMEFESSAVPSYLQPDKESDFD 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,705,644
Number of Sequences: 37544
Number of extensions: 239736
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)