Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13a13
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 32 0.072
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 29 0.51
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 27 2.0
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 3.6
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 26 4.7
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 26 4.7
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 4.7
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 26 6.2
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 26 6.2
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 6.2
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 25 8.2
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 25 8.2
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 32.3 bits (70), Expect = 0.072
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 451 NSFLNDLTSILTKTVT-DPYSKVKVEACECIILLAENLQRDFHFQSESYVKPVLSNLAHQ 627
N F N L +ILTK+V+ D V + A CI +A+ L+ +F + + + +L +
Sbjct: 322 NDFFN-LVAILTKSVSKDANIMVVINAAHCIQAMAKGLRSNFSKYASTSINALLERSKEK 380
Query: 628 HFRVRAAAVKAIGAIVMSGNV 690
V + A+ A++ + ++
Sbjct: 381 KANVIESLSSAMDAVLATSSL 401
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 29.5 bits (63), Expect = 0.51
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 235 DQSEACRELAVQIISNFIEKLPL-NDYYLTYIFPTLVRRIGCPEIVEESEEIRLVLIQLV 411
D E + + + +N I ++ N Y T I R E+ EE+EEI LVL+ ++
Sbjct: 417 DSDEIPSNVMLSVCTNLINEVASQNKYSSTEISQITTNR----EVEEENEEILLVLLNII 472
Query: 412 HTILDR 429
+++ R
Sbjct: 473 SSVIGR 478
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 430 YKVTHYLNSFLN-DLTSILTKTVTDPYSKVKVEACECIILLAENLQRDFHFQSES-YVKP 603
Y ++ +N+ ++ D T + T P S+ + + L ENL+ F +S S Y P
Sbjct: 218 YDQSYLVNASVSGDPTPVKVLNTTSPKSENPLNQSSFLSFLGENLKPKFTSRSSSVYASP 277
Query: 604 VLSNL 618
+ S+L
Sbjct: 278 IKSSL 282
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/39 (28%), Positives = 26/39 (66%)
Frame = +1
Query: 202 EIYAHVLKSYSDQSEACRELAVQIISNFIEKLPLNDYYL 318
E+ A ++++ DQ+++ RE+AV ++ + E + L++ L
Sbjct: 123 ELSAFLVQATMDQNDSIREMAVYVLYSIAETVDLDNKLL 161
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 139 LSEEIFENPENVDCDLTVVFPEIYAHVLKS 228
L+ EIF NPE D PE+ +V++S
Sbjct: 288 LAPEIFFNPEIASSDFLTPLPELVDNVVQS 317
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 176 STFSGFSKISSLNFVSAFFRAIFDSL 99
+TF F KI ++AF+R +F SL
Sbjct: 232 NTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +1
Query: 166 ENVDCDLTVVFPEIYAHVLKSYSDQSEACRELAVQIISNFIEKLPLNDYYLTYIFPTLVR 345
+N+ VVF +L S+SD+ E R+ A ++ LP T + P+L+
Sbjct: 85 KNLGTPSEVVFLPYLPTILDSFSDRGEVVRQAAKMAAQALLDCLPAGAVE-TRLIPSLIS 143
Query: 346 RIGCPEIVEESEEIRLVLI 402
+ I S+ L L+
Sbjct: 144 YLDDSSIKWPSKVAALQLL 162
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 6.2
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Frame = +1
Query: 223 KSYSD--QSEACRELAVQIISNFIEKLPLN--DYYLTYIFPTLVRRIGCPEIVEESE--- 381
KSY + S+ R L +++N + + +N D T + I ++VE +
Sbjct: 265 KSYDEAGSSDRIRVLKYLVLANMLSESEINPFDSPETQPYKDNPHIIAMTKLVEAYQIRD 324
Query: 382 --EIRLVLIQLVHTILDRYKVTHYLNSFLNDLTSILTKTVTDPYSKVKV 522
+ +L H ILD + Y++ L + S + + PY+ VK+
Sbjct: 325 ITAVERILQTYQHDILDDDFIRQYVDKILYSIRSQVLIELVKPYTSVKL 373
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 200 GNTTVRSQST-FSGFSKISSLNFVSAFF 120
GN T+ S S+ F GF+ ++S NF++ F
Sbjct: 400 GNLTIGSHSSAFQGFTYVASPNFLNCEF 427
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 211 AHVLKSYSDQSEACRELAVQIISNFIEKLPLNDYYLTY 324
A++L +DQS+A + +I FIE L +D +Y
Sbjct: 241 AYILNYLTDQSDAEKNRVTKIRKEFIEMLKSSDKIHSY 278
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 52 EENARRVLEQYITALQSESKIARKNALTKLSEE 150
+EN R L++ + ALQ ES R+ +L EE
Sbjct: 112 KENERDRLQEKLRALQEESANLRRQRENRLREE 144
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 170 FSGFSKISSLNFVSAFFRAIFDSLCKAVIYC 78
FSGF S L+ V+A F +FD+ + C
Sbjct: 195 FSGFCASSPLSVVAAAFADMFDNKTRGPAVC 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,427
Number of Sequences: 5004
Number of extensions: 47579
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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