Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13a13
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0211 - 6436275-6436361,6436969-6437235,6438475-6438543,643... 33 0.23
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 32 0.40
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 30 2.1
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 29 3.7
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354... 29 4.9
02_05_1217 + 34999631-34999945,35000670-35000835,35001908-350020... 29 4.9
03_05_0092 - 20714102-20717902 28 6.5
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981 28 8.6
02_01_0353 + 2545982-2549833 28 8.6
01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796 28 8.6
>03_02_0211 -
6436275-6436361,6436969-6437235,6438475-6438543,
6439108-6439236,6439319-6439480,6439558-6439678,
6439813-6439928,6440697-6440762,6441010-6441091,
6441236-6441327,6441430-6441537,6441919-6442013,
6442092-6442234,6442336-6442364,6442452-6442571,
6442645-6442734,6443116-6443181,6443267-6443380,
6443482-6443574
Length = 682
Score = 33.1 bits (72), Expect = 0.23
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Frame = +1
Query: 127 ALTKLSEEIFENPENVDC-----DLTVVFPEIYAHVLKSYSDQSEACRELAVQIISNF-- 285
AL++ +EI +P N L + +I +L SDQ E R +A +
Sbjct: 238 ALSEFLQEIKNSPINEFVKLGGEQLVPYYADILGAILPCISDQEEKIRVVARETNEELCA 297
Query: 286 IEKLPLNDYYLTYIFPTLVRRIGCPEIVEESEEIRLVLIQLVHTILDRYKVTHYLNSFLN 465
I+ P + + I ++ +R E+ E E R+ + T+L RY+ +L ++LN
Sbjct: 298 IKADPTEGFDIGAIL-SIAKR----ELNSEHEATRIESLHWFSTLLVRYRA-EFL-AYLN 350
Query: 466 DLTSILTKTVTDPYSKVKVEACECIILLAENLQRDFHFQS 585
D+ L ++DP V + E +AE H S
Sbjct: 351 DIFDPLLNALSDPSDAVVLLVLEVHARIAEESHHFHHLVS 390
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/84 (26%), Positives = 38/84 (45%)
Frame = +1
Query: 421 LDRYKVTHYLNSFLNDLTSILTKTVTDPYSKVKVEACECIILLAENLQRDFHFQSESYVK 600
LDR + N+ + + +L + ++ P + A + +AE + E V
Sbjct: 370 LDRLAIAIGGNAIVPIASELLPQYLSAPEWQKHHAALITLAQIAEGCAKVMLKNLEQVVS 429
Query: 601 PVLSNLAHQHFRVRAAAVKAIGAI 672
+L+ H H RVR AA+ AIG +
Sbjct: 430 MILNGFQHPHARVRWAAINAIGQL 453
>01_06_1127 -
34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +1
Query: 463 NDLTSILTKTVTDPYSKVKVEACECIILLAENLQRDFHFQSESYVKPVLSNLAHQHFRVR 642
+++ L K +TD V VEA + I LA+ L+ F S + +L L + +
Sbjct: 325 HEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFSGNSRVLLPVLLEKLKEKKPTMT 384
Query: 643 AAAVKAIGAIVMSGNVKCLEL 705
A + + A+ SG + L++
Sbjct: 385 EALSQTLQAMHKSGCITLLDV 405
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 547 LAENLQRDFHFQSESYVKPVLSNLAHQHFRVRAAAVKAIGA 669
LAE L F F + + L+H+++ VRAAA +A+ A
Sbjct: 1076 LAEELWDRFGFDVFTDYSGIFDALSHKNYNVRAAAAEALAA 1116
>03_05_0875 -
28434894-28435082,28435173-28435247,28435399-28435490,
28435721-28435835,28436019-28436188,28436237-28436310,
28436397-28436553,28436658-28436730,28436898-28436960,
28437067-28437341,28437710-28437816,28437884-28438788,
28439742-28440032
Length = 861
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 223 KSYSDQSEACRELAVQIISNFIEK 294
K Q + CRE+A++II N IEK
Sbjct: 601 KDLKAQKDGCREVAIKIICNNIEK 624
>02_05_1217 +
34999631-34999945,35000670-35000835,35001908-35002005,
35002245-35002319,35002413-35002481,35002552-35002637,
35002710-35002827,35003575-35003902,35003995-35005682,
35005822-35005881,35005953-35006027,35006105-35006197,
35006298-35006372,35006464-35006532,35006614-35006682,
35006994-35007113
Length = 1167
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 460 LNDLTSILTKTVTDPYSKVKVEACECIILLAENLQRDFHFQSESYVKPVLSNL 618
L L + L + D S V +AC + L++ L RDF +E + +L N+
Sbjct: 172 LKQLVTPLITQILDRRSSVVKQACHLLNFLSKELLRDFEPCAELLIPVLLKNV 224
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +1
Query: 106 SKIARKNALTKLSEEIFENPENVDCDLTVVFPEIYAHVLKSYSDQSEACRELAVQIISNF 285
S + +++ L L +N +NV CDL+ F ++ A S D C +L V
Sbjct: 1014 SLLQQQHLLRSLEVLSIKNCDNVTCDLSDGFQDLTALTDLSLYD----CPKLLVDKFHTS 1069
Query: 286 IEKLPLNDYYLTY 324
+ KL +++ ++T+
Sbjct: 1070 LRKLEISECFITH 1082
>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
Length = 1158
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 460 LNDLTSILTKTVTDPYSKVKVEACECIILLAENLQRDFHFQS-ESYVKPVLSNLAHQHFR 636
L L I+ ++D KV+ + LAE + +S ++ +KP+ + +
Sbjct: 536 LKSLVEIIEHGLSDENQKVRTITALSLATLAE-AAAPYGIESFDTVLKPLWKGIRSHRGK 594
Query: 637 VRAAAVKAIGAIV 675
V AA +KAIG I+
Sbjct: 595 VLAAFLKAIGFII 607
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 460 LNDLTSILTKTVTDPYSKVKVEACECIILLAENLQRDFHFQS-ESYVKPVLSNLAHQHFR 636
L L I+ ++D KV+ + LAE + +S ++ +KP+ + +
Sbjct: 661 LKSLVEIIEHGLSDENQKVRTITALSLAALAE-AAAPYGIESFDTVLKPLWKGIRSHRGK 719
Query: 637 VRAAAVKAIGAIV 675
V AA +KAIG I+
Sbjct: 720 VLAAFLKAIGFII 732
>01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796
Length = 854
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 349 IGCPEIVEESEEIRLVLIQLVHTILDRYKVTHYLNSF 459
I C ++ E + +RL+ I++ ++ +D Y +TH F
Sbjct: 464 IQCMLVISEFKYLRLLQIEVYYSNIDSYDLTHMCEFF 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,292,368
Number of Sequences: 37544
Number of extensions: 261360
Number of successful extensions: 695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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