Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13a13
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical pr... 32 0.36
U70851-3|AAB09129.1| 293|Caenorhabditis elegans Hypothetical pr... 31 1.1
L15314-4|AAF99988.2| 618|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical pr... 29 3.3
U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 28 5.8
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 28 5.8
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 28 5.8
>Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical
protein C07E3.8 protein.
Length = 294
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1
Query: 217 VLKSYSDQSEACRELAVQIISNFIEKLPLNDYYLTYI---FPTLVRRIGCPEIVEESEEI 387
+LK+ D A EL + + +E++ NDY + + FPT I +E ++I
Sbjct: 192 ILKTCEDSPYAMEELQLSLTGKMLEEMSNNDYKVKHFRKCFPTKKMSIKILSQIENIQDI 251
Query: 388 RLVLIQ 405
R + IQ
Sbjct: 252 RKLCIQ 257
>U70851-3|AAB09129.1| 293|Caenorhabditis elegans Hypothetical
protein M02B7.4 protein.
Length = 293
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 123 FSRYL*FAL*SRYILFKNTSSIFFQR-TFSFRHYLKN 16
F +++ F+ + + LFKN++ IFFQ+ TF + LKN
Sbjct: 256 FGKFVFFSKQNEFHLFKNSAKIFFQKFTFFYGFPLKN 292
>L15314-4|AAF99988.2| 618|Caenorhabditis elegans Hypothetical
protein K06H7.3 protein.
Length = 618
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 43 CPLEENARRVLEQYITALQSESKIARK-NALTKLSEEIFENPENVDCDLT 189
CP++ R VL ++ +L + RK +T +EE FE EN + DLT
Sbjct: 66 CPVDFGDRAVLLEHYQSLFHRTNTLRKARNMTVYTEEDFEGIENSENDLT 115
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 29.5 bits (63), Expect = 2.5
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Frame = +1
Query: 70 VLEQYITALQSESKIARKNALTKLSEEIFENPENVDCDLTVVFPEIYAHVLKSYSDQSEA 249
+L+ T L ++ ++ AL L +++FE ++ D + I +L Y +
Sbjct: 128 LLDTLATVLMQPDELMQEGALGAL-QKVFE--DSADRYESEFLRPIMPKLLVFYEHHAAK 184
Query: 250 CRELAVQIISNF--IEKLPLNDYYLTYIFPTLVRRIGCPEIVEESEEIRLVLIQLVHTIL 423
R LA+ ++ + P+ D+ + +L R + EE++ L + + +L
Sbjct: 185 MRALAMNCVNCILMVNNDPI-DFAIDQFLTSLFARHN-----DNDEEVQKQLCRSLTLLL 238
Query: 424 DRYKVTHYLNSFLNDLTSILTKTVTDPYSKVKVEACECIILLAEN 558
D + + + N + I+ KT D + +EACE + +AEN
Sbjct: 239 DTH-IEKMMPHLPNVIEYIIKKT-QDHNESIALEACEFWLSIAEN 281
>Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical
protein F34H10.4 protein.
Length = 452
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 520 VEACECIILLAENLQRDFHFQSESYVKPVLSNLAHQHF 633
+E CI L+ E+L+R+ F+S V+ V+ L +H+
Sbjct: 313 IELSTCIGLIYESLERNTDFESYLKVRSVVQYLVSKHY 350
>U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical
protein K06A1.6 protein.
Length = 937
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 160 NPENVDCDLTVVFPEIYAHVLKSYSDQSEACRELAVQIISNFIEKLPLNDYYL 318
NP+ +C + +FPE+ H K+ + R A Q SN + K + Y++
Sbjct: 158 NPDLTNCQIKQMFPEMADHWRKALAKSPVVRRTAADQETSNPVNKHRSSRYWI 210
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 28.3 bits (60), Expect = 5.8
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 5/225 (2%)
Frame = +1
Query: 28 MSKTKCP-LEENAR-RVLEQYITALQSESKIARKNALTKLSEEIFENPENVDC--DLTVV 195
+SKTK P ++E +L+ + AL E++ + A L+ + + E + V
Sbjct: 117 LSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVT 176
Query: 196 FPEIYAHVLKSYSDQSEACRELAVQIISNFI-EKLPLNDYYLTYIFPTLVRRIGCPEIVE 372
P I+ V QS E A+ ++N + L DY + + + E V+
Sbjct: 177 IPLIHLSV-----HQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHL--MEKVD 229
Query: 373 ESEEIRLVLIQLVHTILDRYKVTHYLNSFLNDLTSILTKTVTDPYSKVKVEACECIILLA 552
+ + + I + + R+K H L L+ L K V +V+ +AC + L
Sbjct: 230 QLGDSHVRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLT 289
Query: 553 ENLQRDFHFQSESYVKPVLSNLAHQHFRVRAAAVKAIGAIVMSGN 687
+ ES V P + + + A A++ +G V +GN
Sbjct: 290 DGPDEQIELARESGVLPHVVAFFKEAENLVAPALRTLGN-VATGN 333
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 28.3 bits (60), Expect = 5.8
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 5/225 (2%)
Frame = +1
Query: 28 MSKTKCP-LEENAR-RVLEQYITALQSESKIARKNALTKLSEEIFENPENVDC--DLTVV 195
+SKTK P ++E +L+ + AL E++ + A L+ + + E + V
Sbjct: 117 LSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVT 176
Query: 196 FPEIYAHVLKSYSDQSEACRELAVQIISNFI-EKLPLNDYYLTYIFPTLVRRIGCPEIVE 372
P I+ V QS E A+ ++N + L DY + + + E V+
Sbjct: 177 IPLIHLSV-----HQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHL--MEKVD 229
Query: 373 ESEEIRLVLIQLVHTILDRYKVTHYLNSFLNDLTSILTKTVTDPYSKVKVEACECIILLA 552
+ + + I + + R+K H L L+ L K V +V+ +AC + L
Sbjct: 230 QLGDSHVRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLT 289
Query: 553 ENLQRDFHFQSESYVKPVLSNLAHQHFRVRAAAVKAIGAIVMSGN 687
+ ES V P + + + A A++ +G V +GN
Sbjct: 290 DGPDEQIELARESGVLPHVVAFFKEAENLVAPALRTLGN-VATGN 333
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 28.3 bits (60), Expect = 5.8
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 5/225 (2%)
Frame = +1
Query: 28 MSKTKCP-LEENAR-RVLEQYITALQSESKIARKNALTKLSEEIFENPENVDC--DLTVV 195
+SKTK P ++E +L+ + AL E++ + A L+ + + E + V
Sbjct: 117 LSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVT 176
Query: 196 FPEIYAHVLKSYSDQSEACRELAVQIISNFI-EKLPLNDYYLTYIFPTLVRRIGCPEIVE 372
P I+ V QS E A+ ++N + L DY + + + E V+
Sbjct: 177 IPLIHLSV-----HQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHL--MEKVD 229
Query: 373 ESEEIRLVLIQLVHTILDRYKVTHYLNSFLNDLTSILTKTVTDPYSKVKVEACECIILLA 552
+ + + I + + R+K H L L+ L K V +V+ +AC + L
Sbjct: 230 QLGDSHVRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLT 289
Query: 553 ENLQRDFHFQSESYVKPVLSNLAHQHFRVRAAAVKAIGAIVMSGN 687
+ ES V P + + + A A++ +G V +GN
Sbjct: 290 DGPDEQIELARESGVLPHVVAFFKEAENLVAPALRTLGN-VATGN 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,896,544
Number of Sequences: 27780
Number of extensions: 254934
Number of successful extensions: 874
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -