Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a11
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    31   0.19 
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   1.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.5  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   7.3  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   7.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.6  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 404 IYCKNLYFVRRYVCSVMSFYYKNIVNIQI*SGSTAERVLKWF*TVLFLLMLFIDYTLNIF 583
           + C  LY + R++    SF  K  V  +      A  +L W  ++LFL M    +  + F
Sbjct: 61  LVCLYLYLIYRWI--TRSFTVKQTVGSEFSGLRKAHGILLWLLSILFLGMTAFMFVNDAF 118

Query: 584 ETALRSESKWILVITF--HLSLL 646
            TA       I ++ +  HL LL
Sbjct: 119 PTAFSDPPVKICLLAYSVHLFLL 141


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 584 QIY*VYNL*KALIKTKQFKTISKHALQC 501
           Q++  YN  K L+ +KQF+ + + AL C
Sbjct: 284 QLFAFYNYVKGLVSSKQFQILIRFALVC 311


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 430  DKIQIFTVNKKPYHVLKITLNKNEFIYLHTTINLYYKAYSKIY 302
            +KIQI T     +    +    N+F++L T +   Y  Y  +Y
Sbjct: 1595 NKIQIITNITLDFDSFVLRTTVNDFLFLQTILRKIYNFYYALY 1637


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 548 LMLFIDYTLNIF--ETALRSESK-WILVITFHLSLLKIVS 658
           L+L + +  N+F  + AL   S  WIL+ + HLS+ KI S
Sbjct: 392 LLLCLKWPFNLFMDKNALNVYSDLWILLGSLHLSITKIKS 431


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 358 FIYLHTTINLYYKAYSKIYATMNYNM 281
           F+YLH    LYY +Y K   TM +N+
Sbjct: 92  FLYLHIGRGLYYGSY-KYPRTMTWNI 116


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 314 FQNLRNYELQHDNISLDCIYGQLNL 240
           FQ +RNY LQH  I +  I   L L
Sbjct: 741 FQKMRNYMLQHQAIRIHVIGDILKL 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,109
Number of Sequences: 5004
Number of extensions: 50635
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)