Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a11
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0837 - 23554013-23554771                                         28   5.7  
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439...    28   7.5  

>12_02_0837 - 23554013-23554771
          Length = 252

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 140 CSTFYQYQIQTQSAKGSLARLMALKPLIK-TEKRRDLTDH 256
           C TFY Y  +T  A+G  AR   L+ +++   K +D  DH
Sbjct: 184 CVTFYVYAARTAGARG-FARADELRAVVEAVAKLKDFLDH 222


>01_06_1723 -
           39443176-39443505,39443615-39443710,39443834-39443902,
           39444381-39444443,39444521-39444598,39444725-39444838,
           39445727-39445804,39446457-39446522,39446739-39446804,
           39446896-39447003,39447355-39447432,39447951-39448010,
           39448087-39448191,39448407-39448595,39448922-39448985,
           39449244-39449385,39449494-39449654,39449952-39450076,
           39450230-39450300,39450410-39450560,39450713-39450769,
           39451049-39451143,39451331-39451379
          Length = 804

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 448 RTYISSDKIQIFTVNKKPYHVLKITLNKNEFIY-LHTTINLYYKAY-SKIYATM 293
           +TYI S  +Q+F + ++  +     L KNE ++ L        KAY SK+YA +
Sbjct: 414 QTYILSSSMQVFLIIRRSLNRCS-ALTKNETLFNLFQVFQRVLKAYASKLYARL 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,879,783
Number of Sequences: 37544
Number of extensions: 243032
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)