Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13a09
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 67 1e-11
11_06_0326 - 22382001-22383248 32 0.39
07_01_0974 + 8211602-8212051 31 0.90
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 30 2.1
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 29 2.8
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125 29 4.8
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704... 28 6.4
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 28 6.4
01_01_0512 + 3735005-3735580 28 6.4
02_05_0617 + 30383334-30383579,30383592-30383681,30383772-303839... 28 8.4
01_07_0253 + 42304572-42304812,42304963-42305018,42305145-423052... 28 8.4
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680... 28 8.4
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 28 8.4
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 66.9 bits (156), Expect = 1e-11
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Frame = +2
Query: 239 AVLANKPKTGKIPVDISLGDTKP-VSTVDMFRGLMEYVWPKDNQAIRNRVTLSLSLLFGA 415
AV K K+ DIS D ++ + + L +Y+ D+ R R+ LSL LL GA
Sbjct: 97 AVAVGKSSDDKVKKDISKKDVDDQIADTQILKNLGKYLLLNDSPDFRFRLILSLGLLVGA 156
Query: 416 KVMNVTVPFLFKYAVDEVNQVATTPAGDALLGMATVP-QALGTTAFSLLVGYGLARA 583
KV+NV VPFLFK AVD + +A A A AL + ++L+GYG+AR+
Sbjct: 157 KVINVQVPFLFKLAVDWLAALAGAETSLASFTEANATLLALFASPAAVLIGYGIARS 213
>11_06_0326 - 22382001-22383248
Length = 415
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 633 ATRANTALRSSLKPAAV-ARASPYPTNKLKAVVPNACGTVAMPSSASPAGVVA 478
A + N A SS+ PAAV AR+SP +K + P + A SP + A
Sbjct: 333 ALKPNPAAASSINPAAVVARSSPVAAPAMKPLAPRSPAAAAAAVVPSPVKIAA 385
>07_01_0974 + 8211602-8212051
Length = 149
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 564 PTNKLKAVVPNACGTVAMPSSASPAGV 484
PTN VP CGT P++ SP GV
Sbjct: 69 PTNPAPPAVPCNCGTTTAPAAPSPPGV 95
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/77 (31%), Positives = 32/77 (41%)
Frame = -1
Query: 570 PYPTNKLKAVVPNACGTVAMPSSASPAGVVATWFTSSTAYLKRNGTVTFITFAPNRSDRD 391
P+P K VP A V P S+ V + AY KR VTF+ P +
Sbjct: 515 PFPDAKA-GEVPIAY-VVRSPDSSLTEVDVQKFIEKQVAYYKRLKRVTFVGSVPKSASGK 572
Query: 390 SVTRFRMAWLSLGHTYS 340
+ R +A L +GH S
Sbjct: 573 ILRRQLIAQLGIGHYLS 589
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 524 PQALGTTAFSLLVG--YGLARATAAGFNELRNAVFAR 628
P+AL TTA+ +L+G YG+ FN N V+ R
Sbjct: 330 PEALHTTAYEVLMGLFYGIGALVLLKFNAYINCVYNR 366
>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
Length = 790
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 179 YSSPSPNNQGGQDSAKNVLAAVLANKPKTGKIP 277
YS P P++ D A+ + AAVL++ P G +P
Sbjct: 69 YSPPRPDSPADDDLARRLAAAVLSS-PNPGSLP 100
>08_02_1053 -
23968372-23968442,23969245-23969294,23970396-23970457,
23970527-23970709,23970737-23970901,23972235-23972408
Length = 234
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 657 ARRRMECWATRANTALRSSLKPAA-VARASPYPTNKLKAVVPNACGTVAMPSSASPAGVV 481
+RRR A +T+ SS P A PYP P + PS A P+ +
Sbjct: 2 SRRRKREVAPPPHTS--SSYPPGVPTLSAVPYPYGGPWFATPPPAWFASPPSQAMPSSSI 59
Query: 480 ATWFTSSTAYLKRN 439
+ W +S +++ N
Sbjct: 60 SAWLNNSNDHIESN 73
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 518 WPCRAARL-RPVSSPLGSLRPQ--HI*KGMAPSHSSLSHQT 405
W R RL R + PL + RP + KG APS SSL QT
Sbjct: 126 WSTRQKRLARLLRGPLPAARPNKHNSGKGKAPSSSSLDSQT 166
>01_01_0512 + 3735005-3735580
Length = 191
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 588 AVARASPYPTNKLKAVVPNACGTVAMPSSASPAGVVATWFT 466
A A+P PT ++ P GT+ P+ A+ W+T
Sbjct: 26 ASGTATPTPTTSSQSQQPQPAGTLLQPALAADLAARTCWYT 66
>02_05_0617 +
30383334-30383579,30383592-30383681,30383772-30383901,
30384578-30384591
Length = 159
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -2
Query: 530 PAAQWPCRAARLRPVSSPLGSLRPQHI*KGMAPSHS 423
PAAQW R VS P GS RP+ AP S
Sbjct: 8 PAAQWLLPLRRAPAVSPPSGSYRPRRPAAPTAPPGS 43
>01_07_0253 +
42304572-42304812,42304963-42305018,42305145-42305210,
42305326-42305367,42305446-42305505,42305603-42305632
Length = 164
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 545 LLFLTPAAQWPCRAARLRPVSSPL 474
L +TP A WP A R R V+SP+
Sbjct: 11 LFSVTPTACWPASARRRRRVASPV 34
>01_05_0600 +
23566223-23566355,23567752-23567855,23567958-23568053,
23568134-23568253,23568543-23568710,23568921-23569012,
23569739-23569857,23570547-23570670,23570801-23570924,
23571291-23571359,23571470-23571561,23571645-23571722,
23571927-23571994,23572073-23572209
Length = 507
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 458 VDEVNQVATTPAGDALLGMATVPQALGTTAFSLLVGYGLARATAAGFNELRNAVFARVAQ 637
V +V+++ +P+ + G A G++A+ L G+++ G N LR V +
Sbjct: 157 VKKVSEMNLSPSNASANGRPAGSNASGSSAY--LPNGGISKPV--GLNSLRLPVVVTSQE 212
Query: 638 HSIRRLACNVFTHLHN 685
S+ VFTH H+
Sbjct: 213 TSLSASCRRVFTHAHD 228
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 600 LKPAAVARASPYPTNKLKAVVPNACGTVAMPSSASPAGVVATWFTSSTA 454
L P ++ A+ PT L P++ + PSSASP A + SS A
Sbjct: 349 LGPTTISTATSCPTVTLDLTAPHS---LLHPSSASPYAAAAAGYESSRA 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,768,835
Number of Sequences: 37544
Number of extensions: 494453
Number of successful extensions: 1574
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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