Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13a06
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    27   2.2  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   5.1  
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   9.0  

>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = -1

Query: 158 TVLMLSHVLLKQYCN-----YLQLCKAIVILNI*FKKKNMLIYHNELCVHCIDHYNG 3
           T+ +L  ++LK+ CN     ++  C+++ +L +  K  N L++ + + +  I+H+ G
Sbjct: 429 TLPILRDLILKE-CNVTSITFIWSCRSLSLLKVASKSLNSLLHQSNVRLKIINHFTG 484


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 366 YRKRPKSRKYLQKTSYFLNVTTFVIR---SKFN 277
           +RK+  S + + +  YFLN++TF I    SK+N
Sbjct: 90  FRKKNPSFEKVSELLYFLNISTFPIELVISKYN 122


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 566 RSMLTFESVPTIVYTRCLPKRYELQVDI 483
           +++ T + +PT  Y  C+P +Y +Q DI
Sbjct: 55  KTITTTKGLPTNAYYNCVPSKY-IQSDI 81


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -2

Query: 325 FIFSQCHH----VRDSFEI*SNQFLFVHVLACLVQHCLRAMYSRISFKNRPQLL*NIQKK 158
           F F  C+H    ++ SFE+  N   F     CL  + L    S I   ++  L+     +
Sbjct: 378 FEFLSCYHSFLALQFSFELPDNVIYFAPGYICLHAYLLELTISVIHISDKKPLMLPTGHE 437

Query: 157 QF*C 146
           QF C
Sbjct: 438 QFPC 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,311
Number of Sequences: 5004
Number of extensions: 57025
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)